Ccae038781.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:52869173-52873502[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.9e-05 0.0071 18.1 2.9 1 23 525 547 525 547 0.98 2 18 9.6e-06 0.0024 19.6 0.4 1 23 553 575 553 575 0.97 3 18 3.9e-05 0.0097 17.7 1.7 1 23 581 603 581 603 0.98 4 18 1.6e-05 0.0038 18.9 3.1 1 23 609 631 609 631 0.97 5 18 3.6e-05 0.0087 17.8 4.7 1 23 637 659 637 659 0.99 6 18 6.2e-05 0.015 17.1 5.6 1 23 665 687 665 687 0.97 7 18 1.7e-07 4.2e-05 25.1 4.3 1 23 693 715 693 715 0.98 8 18 1.1e-07 2.8e-05 25.7 2.4 1 23 721 743 721 743 0.97 9 18 0.00015 0.038 15.8 5.7 1 23 749 771 749 771 0.97 10 18 6.1e-05 0.015 17.1 6.4 1 23 777 799 777 799 0.98 11 18 1.6e-05 0.004 18.9 4.7 1 23 805 827 805 827 0.98 12 18 3.9e-05 0.0095 17.7 8.3 1 23 833 855 833 855 0.98 13 18 5.8e-06 0.0014 20.3 7.8 1 23 861 883 861 883 0.97 14 18 1.7e-06 0.0004 22.0 7.9 1 23 889 911 889 911 0.98 15 18 0.00021 0.052 15.4 9.5 1 23 917 940 917 940 0.95 16 18 0.00018 0.044 15.6 0.5 1 23 946 968 946 968 0.97 17 18 0.00078 0.19 13.6 4.3 1 23 978 1000 978 1000 0.99 18 18 6.6e-06 0.0016 20.1 1.7 1 23 1006 1029 1006 1029 0.96
Sequence Information
- Coding Sequence
- ATGAACTCGGAGCATACAGTTCAAGGGTCTGATGGAGGCAATGCTGGTGATGCTCAACAGAGGCAGCAGGTTCAGCCACAACAGCAACCTACCCAGCATTCGCCATCACAGGCGCCACcgcagcaacagcagcaacaacaacagcctCAACATCATCAACACCATGTTCATCATCGTTTACCGCATCAGCCACAAATGGATGAGAACCAGCATcgacaacagcaacagcaacaacaccattcgcaacagcaacagcaacagcaacaacagcatcAGCAGAGGCAACAATTGCCACAACAACAGCATCcccaacaacagcaacaacagcatcATCAGCAACAGCATCCCCATccacaacaacagcagcagccacagcaacagcaacaacatcCGCACACACAACAGCAGCATCCTCAACAACAGCCCCAGCAACAGCCATCGCAACATCCCATTCAACAACAAAACAGAGGTCCTGGGGGTGTCATACAACCTGTTGGAGATGCAGATGGCAAACATCCGCTACCGATTTCAGGTGTTCCACATCTGGGAAAGTACTGGGTAGTTACAAATCTCTTCCAAGGTGGTCCTGGACCAAATGCATACAATGTATCAGCACCTCCAACATCATCTACAGCTGGAATTTCTTTGCCACCTCCAGTGCCGCCGCATACAAGTTCATCCATGGTGAAATTGGAGACAGTAAAACAGGAACCCCAAAATATGCATCAACAACGTCATCCACAACAATTACATGCTGGTGGAACACCAACTAGTGTTAATGCAACACCTATTCAAATACCTAATCCTTTGATAACTTCAGTTGGAGGACAGAATCAATGTGGAAACAATCCAATAATACCGAATGGACCACCACCAGAGCATATACAAGTATCAGTAAATCCAGAAAATAGTCTTATGGTTATGGATACATCTTGTTCTTCTATGAAACAggaaaaaatgataaattcacaaaatatgGGATCGGAACCCATGCAAGTCGACAGACCAAATTCGCATCAAATGTCACATTCAGTAAAGGAAGAGAAaccttttaataataattgtaaagGGCCGCAACACCAACAAGTTCAATCCCAGTACGTTGGATCAGATGGAAAAATGCATATTCCACATTTGCTAGATGGTCGTAACGCTGATGGTTCATTGCTAAAAATTCAACCAAATGAACAAGAGATCGGAAAATCAGTGGGTGTGGAAATGTACAAAGTCAATATTGAGGACTTAAGCCAATTTTTGTCATATCATGAAGTATTTGGAAAATTACATGGCGATGTGATATCACATCCAATAACTCATGCAAACCCTGCACATTCTACTAATACAGTAACAAATACAAGTATACCATCTTCGACGACGACAAATGTTGTGGCAACTACTAGTGCAAATGGTGGAGGAAGTGATCTGCTTATAcccaaaatggaaaatgtcaTGCCAAAAATCGACAATGTTATaccgaaaatggaaaatataattccaaaaattgaaatttctggCATTAATCAATCTCAGCCATTAACTCTAGCCGATGGTACTACTATAACACCTAGCACTCATACTTGCGATATTTGcggaaaaatgtttcaatttcgTTATCAATTAATTGTCCATCGTCGCTATCATAGTGAAAGAAAACCATTTAATTGTCAAGTGTGTGGTCAAGGATTTACCACTTCTCAAGATTTAACACGCCATGGAAAAATTCACGTTGGATGTCCAATGTTTACTTGTAATGtttgttttcatgtttttgcAAATGATGCCAGTTTAGAAAGGCATATGAAACGTCATTCAACTGATAAACCTTTTGCTTGCACCATATGCCAGAAAACATTCGCACGAAAGGAACATTTAGACAATCATTTCCGGAGCCACACTGGAGAAACCCCATTTCGCTGTCAGTATTGTGCTAAAACTTTCACACGAAAAGAACATATGGTTAACCATGTGCGGAAACATACTGGTGAGACACCACATCGTTGTGAGATTTGTAAAAAATCATTTACACGGAAGGAGCACTATGTAAACCATTACATGTGGCATACAGGCGAAACTCCACATCAATGTGAGATTTGTGGCAAAAAGTATACGCGCAAGGAGCACCTTGCTAATCATATGCGGTCTCACACTAATGACACACCGTTCCGTTGTGAAATCTGTGGCAAAAGTTTCAGTCGCAAGGAACATTTCACCAATCACATTTTATGGCATACAGGAGAAACTCCTCATCGTTGTGATTTTTGCGCAAAAACATTCACACGAAAAGAGCATCTTCTTAATCATGTTCGTCAACATACTGGAGAATCTCCACATCGCTGTACATATTGCTTAAAAACTTTCACCAGGAAAGAACATTTAGTTAATCACGTTCGTCAGCATACAGGCGAAACCCCATTTAAATGCACGTTCTGCACGAAAGCGTTCACTCGCAAAGATCATATGGTTAATCACATACGCCAACATACTGGAGAATCACCACATAAGTGCACATTTTGCACAAAAACTTTTACACGAAAAGAACATCTCACTAATCACGTTCGGCAGCATACAGGAGAATCACCACATCGTTGCACATATTGTAAGAAAACATTTACGAGAAAAGAACATCTTACAAATCATGTTCGTTTACACACCGGAGACTCACCGCACAAATGTGAATATTGTCAGAAAACTTTTACACGAAAAGAGCATTTAAATAATCATATGAAGCAACATTCAAGTGATAATCCGCATTGTTGCAATGTATGTAACAAGCCATTTACGCGCAAAGAACATCTTATAAATCACATGTCAAGATGTCACACAGGAGATCGTCCGTTTGCATGTGAAACTTGTGGAAAATCATTCCCTCTAAAGGGTAACCTCTTGTTCCATCAAAGAAGCCATACAAAAGGTCAAGATTGTGAAAGACCTTTCCGATGTGACAAATGTCCAAAAGATTTTATATGCAAAGGTCATTTGGTTTCTCACATGAGGTCTCACTCTGGCGAGAAGCCACATATTTGTACTCTCTGTAGCAAGTCGTTTGTGGAAAAGGGTAATTTAAAACGGCACATTAAGATAAATCATCCGGATGTTTTGATACCACCAACTGTAATGGCAACAATCAAAACAGAAGCCAATGTTACaaTTCCTCATCAACCTCCTACCATGCATACAATACAACAAATTACGGCAACTACTGCAAACTCAACTGCTAGTAATGCAAACAATATAACGACTTTGTCTCCTGGTATGGTTCCAATAATAACTTCAACAATAACATCACATGCTACACAACCACCGCAACATATTCCTACCCAAATTCATCCTGTTCAAATCCACCCAGGTCAAAGTTCTGTAAATCCAGTGGACCAACAGCAACAGAACCAACAGCAATCACAACAGCGTCAAGttcaacaacaaccacaacaaCCTCAACATCAAGTGGTTCAACAACAGCATCAACATCAACCCCATccacaacatcaacaacaacatccACAACAGCCCCAGCAACCACAACAACAAtcacaacagcagcaacagcaacaacaacaacaacaaactcCACAACCAGTTCCCATAGCAATTATTCAGGCTACGGATCCTTCGTCAATAGGACGAACCTCAATTCAAATCCAACACTTACCAACTAATGTGGATCAGCACTCGGTGGTATATTAA
- Protein Sequence
- MNSEHTVQGSDGGNAGDAQQRQQVQPQQQPTQHSPSQAPPQQQQQQQQPQHHQHHVHHRLPHQPQMDENQHRQQQQQQHHSQQQQQQQQQHQQRQQLPQQQHPQQQQQQHHQQQHPHPQQQQQPQQQQQHPHTQQQHPQQQPQQQPSQHPIQQQNRGPGGVIQPVGDADGKHPLPISGVPHLGKYWVVTNLFQGGPGPNAYNVSAPPTSSTAGISLPPPVPPHTSSSMVKLETVKQEPQNMHQQRHPQQLHAGGTPTSVNATPIQIPNPLITSVGGQNQCGNNPIIPNGPPPEHIQVSVNPENSLMVMDTSCSSMKQEKMINSQNMGSEPMQVDRPNSHQMSHSVKEEKPFNNNCKGPQHQQVQSQYVGSDGKMHIPHLLDGRNADGSLLKIQPNEQEIGKSVGVEMYKVNIEDLSQFLSYHEVFGKLHGDVISHPITHANPAHSTNTVTNTSIPSSTTTNVVATTSANGGGSDLLIPKMENVMPKIDNVIPKMENIIPKIEISGINQSQPLTLADGTTITPSTHTCDICGKMFQFRYQLIVHRRYHSERKPFNCQVCGQGFTTSQDLTRHGKIHVGCPMFTCNVCFHVFANDASLERHMKRHSTDKPFACTICQKTFARKEHLDNHFRSHTGETPFRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHYVNHYMWHTGETPHQCEICGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFSRKEHFTNHILWHTGETPHRCDFCAKTFTRKEHLLNHVRQHTGESPHRCTYCLKTFTRKEHLVNHVRQHTGETPFKCTFCTKAFTRKDHMVNHIRQHTGESPHKCTFCTKTFTRKEHLTNHVRQHTGESPHRCTYCKKTFTRKEHLTNHVRLHTGDSPHKCEYCQKTFTRKEHLNNHMKQHSSDNPHCCNVCNKPFTRKEHLINHMSRCHTGDRPFACETCGKSFPLKGNLLFHQRSHTKGQDCERPFRCDKCPKDFICKGHLVSHMRSHSGEKPHICTLCSKSFVEKGNLKRHIKINHPDVLIPPTVMATIKTEANVTIPHQPPTMHTIQQITATTANSTASNANNITTLSPGMVPIITSTITSHATQPPQHIPTQIHPVQIHPGQSSVNPVDQQQQNQQQSQQRQVQQQPQQPQHQVVQQQHQHQPHPQHQQQHPQQPQQPQQQSQQQQQQQQQQQTPQPVPIAIIQATDPSSIGRTSIQIQHLPTNVDQHSVVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -