Ccae032822.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020569.1:16650200-16652301[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-10 1.5e-06 29.2 0.1 2 40 16 54 15 59 0.88 2 2 7.5 1.2e+04 -2.6 0.0 7 15 313 322 312 323 0.81
Sequence Information
- Coding Sequence
- ATGGTGCGAACTTATAAGCCAAAGACAGAGAGGCGCAACATTAATGAAGAAGATGTCAAGAATGCCATATCTTCAGTAATGTCCAAGACATTATCCATACGGCAGGCAGCAAACAAATATAACATCAAAGCTGCAACTTTGCAACACCGCGTGGAAAAGCATCGCAAAGCTCTCAATGATATGGAAGCCTCATCGCCTTCTACTTCGAATTTATATAGTTCCAAGTATACTGTTGCCCAAGTATTCTCAACTCAACAAGAGAAGATGCTTACAGAATACTTGTTAAACTGTAGCAAAATGCACTATGGGCTATCTTTGGAGAACCTTATGACATTGGCCTATGAATTCGCAGAATATTGCGGATGCAAATATCCAGAATCTTGGAAGAGGAACAAATGCGCTGGGAAAGATTGGGCTATAGGATACAGAAAGAGGAACCAGGAAGTTGGTCTAAGAAAACCTGAAAATACCAGCGCAGCAAGGAGTTTCGCATTTAATAAGACCGCTGTAACAGAATTTTTTGATAACTATGAACGTGTTCTGTTACGGTATAATTTTCCACCTAATCGCATTATCAATCTTGATGAAACCGGGGTGACTACAGTTTTACCTACACCCAAAGTTCTGGCCGAAAAGAAACAGAGGCAAGTAGGACAAATAGTATCAGCAGAGAGAGGAGAACTAGTTACGTTTTGCGGAATAGTAACTGCAACAGGGGCTGCTCTTCCTCCTGTCTATGTCTTTCCTCGTGTTCACTTCAAAGACGCGTTTTTAAATGGTTGTCCGGAAGGGAGTCTAGGGTTAGCAACCAGGAGCGGCTGGATGACGGCAGAGTTGCATATTCAAGTTCTGCAGCACATTCAGCGCCACACTTCATGCACTAAGGATAATCCAATTTTAATCATTTGTGACAACCACGAATCACATATTTCCATAGAAGCAGTCAACTACTGTCGTGAGAATGGAATAATCTACTTGTCTCTGCCCCCACATACGTCCCATAAGCTACAACCACTGGATGTTTGTATTTTTGGCCCATTTAAAACCAAACTGAAAATAGCTTTTAACGATTGGCACATCCAAAACGTTGGAAAAACCTTGTCCATTTATAATATAGCGGCTCTCACAAAATCGGCCTTCCTGGAGTCCTTCACGCCGAAAAACGTCACAAGTGGCTTTTCAAAGCCCGGGATTTGGCCACTCAACAGACTTGCGTTTGGAGACGATGATTTTGGTCCCatagaaatttttgatgaGGGCTGTCAGCCTCAACATGCAGACATTAGTCAAAATAAAGCCATTGAAGGAGGAGAAAAGGACCAAGCGCTGCCTGATGAAACCAGGCCTTCAGGTGAGCAGTCCGACATTGTTGAATCACCAAACTTGGCTCCACCTTCCAGTGTCATTCCATCCCCGAACGTTGTCCCATCAAGCGCTACGACTCACTTGTCACCAGCAGCAGTAAGACCCTACCCAAAAAAAGTGATGaatcaaaattcatcaaaaagAGGAAGAGAAAAAGGGAAATCCAGGGTTTACACTGAAACACCAGAGAAGGATAGACTGCAAATAATGCAAGATGAAAAGGACAGAAAACGGCAATTCAAACTGATAAGGGAGAAGGCAAAGGCGTTAAAGACAGCGAGGAATTTACTGGGTCTaacagaaatttcaaaatctaaaaagaaaagagCTTGTTTAGAATCGCCGTCCGACTCAGATTCCAGCCAGAATGAGTCGCTGAAATTGGATGACGATAGCGATATGGATGTTGATTGGCCATCTAATGCAGAAGATGACGAAAAGTTCTATTACGTGGCTCAAGTAATTTCTAAATATAGTTCGACCGAATATGAAGTGTCTTTTCTCAGGAAAAACCCAATGtctaaagtttttgtttttcccaaCGTAGAAGACCAAGCAAGTGTGGATTTTAGAGATGTGGTACTGCACTTGCCTAAACCAAATTATTCTAAAGGCACATCTCGAACATCATCTCACTACACATTTTCATTAGATTTAAGTGCATACAACCTGCAATAG
- Protein Sequence
- MVRTYKPKTERRNINEEDVKNAISSVMSKTLSIRQAANKYNIKAATLQHRVEKHRKALNDMEASSPSTSNLYSSKYTVAQVFSTQQEKMLTEYLLNCSKMHYGLSLENLMTLAYEFAEYCGCKYPESWKRNKCAGKDWAIGYRKRNQEVGLRKPENTSAARSFAFNKTAVTEFFDNYERVLLRYNFPPNRIINLDETGVTTVLPTPKVLAEKKQRQVGQIVSAERGELVTFCGIVTATGAALPPVYVFPRVHFKDAFLNGCPEGSLGLATRSGWMTAELHIQVLQHIQRHTSCTKDNPILIICDNHESHISIEAVNYCRENGIIYLSLPPHTSHKLQPLDVCIFGPFKTKLKIAFNDWHIQNVGKTLSIYNIAALTKSAFLESFTPKNVTSGFSKPGIWPLNRLAFGDDDFGPIEIFDEGCQPQHADISQNKAIEGGEKDQALPDETRPSGEQSDIVESPNLAPPSSVIPSPNVVPSSATTHLSPAAVRPYPKKVMNQNSSKRGREKGKSRVYTETPEKDRLQIMQDEKDRKRQFKLIREKAKALKTARNLLGLTEISKSKKKRACLESPSDSDSSQNESLKLDDDSDMDVDWPSNAEDDEKFYYVAQVISKYSSTEYEVSFLRKNPMSKVFVFPNVEDQASVDFRDVVLHLPKPNYSKGTSRTSSHYTFSLDLSAYNLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00334013;
- 90% Identity
- iTF_00334015;
- 80% Identity
- -