Ccae030101.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- ab
- Assembly
- GCA_963971475.1
- Location
- OZ020568.1:66501407-66505172[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.3e-15 3.9e-12 47.1 0.0 2 40 261 299 260 303 0.93 2 3 0.23 3.8e+02 2.3 0.0 28 39 333 344 332 350 0.86 3 3 2.4e-13 3.9e-10 40.6 0.0 5 38 370 402 369 404 0.95
Sequence Information
- Coding Sequence
- atgAACCACCTTAAGTGGATGGGACACACAACAACGCTTGTGGAATTACAGAAAAACTTGTACAAAGATGTAGCTACTTGCGATATAACAATAGCTACAAAGACAAAAAGATTCAAAGCCCATCGATTTCTGTTATGCTGCTGCAGTGATTACTTCAAAGAAATGTTCCAAGGGATACCAGAGAATCAGGAGATAACTATTGTTGTTCCAGATATAAAGGATGCAGTCATGGAAAACAtattacattttgtttatattggACAAGTTTGtgtgaattcatttaatttgtcGGATTTTCTTGAGACTGTCAATTTGCTTGGGATAAAAACTGAGATGAGTTTCGAATGTAAcctaaacaaaacaaaaatatcgaaaacgtATGGAATGGAgacggaaaattttgaagataCTGTGAAACGGGCTGATGTACCACCTTTGGAGAATACTGAAACTGAAAATGTTGAAGAGAAAGTATTTGAAGAATATCTTGAAGTTTACAATGAAGAAGAGAAAATGGATCAATACACAATTGAACATATTGAGCCAGAATCGAATGAAAGTAATCCTGAATACATGTTAACCGATACTAATGGTGAATCGTTTGTAATATccgaaagaaaagaaaacctTTCAAATAGTAAAAAGCTCACtcaagaaattgattttacaTCAGATGATATGCATGGTAACCCATCAGTTGCACAATTTACCCCATTGGTGACAAAACCAAAAACCGAAGATATAAGCCTAAACGATTCTGGAGGTGAGAAGGAATCACGAGATGAAGCATTTGAGAATGCTGTACAAGCAGTTATAGAAGGTGGTATAAGTCTTCAGAAGGCAGcaacaaaattcaatgtttCTAAGACTGTCTTGTGGCGACGGGTTAGAAAGAATTCTGCATACAGAATTGAGAGAGAACACCCTATGATATCAGCAGCACTTGAAAAACTAGAACAAGGCGAATCTCTTAAAAGTATAAGTCAATGCTTGAAAATTCCAATATCCACTCTGCACAGACACAAAGTTCGACTACTGAATGCTGGACGATTACCTGGTCACATTCAAGTGAGGAAAAGAGATTCAaaggaaaacttaaaaattagaATTCAAAAAGCTATCGAAGGCTGCCGCTGTGGAATGTCACAAAATCATGCATCCACTATCTATTCTGTACCCAAATCAACATTGTGGAGGCATTTACAAAACCTTGGTCTGATCGTCTTTAAAATGCAGGAAGACCAAAGGAAACAGGAATACTCTGATCATCATCAACTCAAAATTGATAAACATAACATCACTGATGACTTACAAACAGATCCAAGATCTGTATACTTACGCACAAAACATGCTTcacaaatttttactttccaaCTTAGTTCAGTTACGGTTACATGCAAATTCGATGATCGTCATGGATTTGTGACTGTTGTCCAAGTCCGCAGAACTGAAAATGTCCAAGACGAGGGCTTAGATACTAATTCGAATGTAGGCTTGTTAATAGATAATATATGA
- Protein Sequence
- MNHLKWMGHTTTLVELQKNLYKDVATCDITIATKTKRFKAHRFLLCCCSDYFKEMFQGIPENQEITIVVPDIKDAVMENILHFVYIGQVCVNSFNLSDFLETVNLLGIKTEMSFECNLNKTKISKTYGMETENFEDTVKRADVPPLENTETENVEEKVFEEYLEVYNEEEKMDQYTIEHIEPESNESNPEYMLTDTNGESFVISERKENLSNSKKLTQEIDFTSDDMHGNPSVAQFTPLVTKPKTEDISLNDSGGEKESRDEAFENAVQAVIEGGISLQKAATKFNVSKTVLWRRVRKNSAYRIEREHPMISAALEKLEQGESLKSISQCLKIPISTLHRHKVRLLNAGRLPGHIQVRKRDSKENLKIRIQKAIEGCRCGMSQNHASTIYSVPKSTLWRHLQNLGLIVFKMQEDQRKQEYSDHHQLKIDKHNITDDLQTDPRSVYLRTKHASQIFTFQLSSVTVTCKFDDRHGFVTVVQVRRTENVQDEGLDTNSNVGLLIDNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00334310;
- 90% Identity
- iTF_00334310;
- 80% Identity
- iTF_00334310;