Ccae018759.1
Basic Information
- Insect
- Chrysops caecutiens
- Gene Symbol
- -
- Assembly
- GCA_963971475.1
- Location
- OZ020568.1:16949570-16955873[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-10 3e-07 31.4 0.0 1 38 462 500 462 505 0.90 2 4 1.5e-13 2.4e-10 41.3 0.1 2 39 517 554 516 557 0.94 3 4 3.5e-17 5.8e-14 52.9 0.0 1 45 571 616 571 616 0.96 4 4 3.7e-18 6.1e-15 56.0 0.1 1 44 623 667 623 668 0.96
Sequence Information
- Coding Sequence
- ATGGATGACTTTGAATTTCATTCCGATCAATCAAAATGGCTGCCAGCACTGAATGTTGTTCCACTTGATGCAAGAAGGCAATTTGATTACAGTCGAAGTCAAGGAGTGGGACTATTAAGAACCGCTGAACATCTGAAAATCAAAGGTTTATGTGAAACAGCAGAGACTGTTGACGAAGGATTAGCAGAGAGTGctcaaacaacaacaatatcaGTGCCAGACACAATACAACAGCCATTGACGAGTACGCCTATAATAAGTCACGTTGCCAGTAATTGTACACAGAGAAAATCGCGAGTTAGAAAGCGTTCAAAGTCACCAGAAACGAATTCTGCTCTTGGTGGACTTGTAACACAAGCATATAGTACCGGTCCAGTGGTATCTGGAACAGCAACAGTACCTGCCACAGTAGTAGCTACAGCCGGGCATGGTGTATCAGCAATAACGAATATCCATTCGTCAGCTGTAACAATACCATCGTCGAATActatcgctgttactagttGTCCAACAATATCGACTGGTGAAGTTGATATTAAAACTGAAACGATCGTTGTTGAACAACAATCAATTGGTGGAACCACAATACGTACTGCTGAAAACGATACTAACGGTCAAGGAGCACCCAAACCGGCAAAGATTTGTAAAACTGAAGACAGTTCAAATAATGGAAGTGGGCCTGTTGGTCCTGGCACTATTGTAACACAAATTGTTGTTTCCCGAGACAGTAAGGATAAGACAATGACGAGTCTAGGAATGGGAATgaATGGTGGTCTATTGGGTGTACCAATGGGTTTCCTGGATTTTGCACCAGAACCACCAGCACCATCAGCAACGCCAGTAACAGAACATGTCGATATGACATGTACACCAAGCGCTGATACAAGAGACTTATCAAATCCCACCGAAGCACTTGATATAGACAATCAGATAGCCCAGCATATAATTCATCGATTAGATCAATCACCAATGCATCATATACAACATCAAAATTCAACTGAagacaataaaacaaatcttatacaaaatattaaaacagaAGTTGTTGATGTTAAACCTCATCTTCAGCAACAAATTCAtggacaacaacaacaacaacaacaacaacaacaacgtcaaacacaacaacaacaacagaatCATCAAGATATGTCTGGGACGACTGTAATGGAAATTGATccaaataatataaaacatgaGCCAGGAATGATAATAACACCAGAAATTGTAACAATGATGACTACAGGACATATGGATATATACAATTCGGATACAAGTGAAGATTCGCTAATGATTGCTAATGGTTCACCAAATGATAATAGTGAACCACATTATACAAATTTGGATCAACAAACTGATTATAAAAGTGTCCCGAAAACATGGACACAAGAAGATATGAATTCAGCATTAGATGCattgaaaaatcataatatgAGTTTAACAAAAGCTTCAGTAACATATGGTATACCATCAACAACATTATGGCAAAGAGCACATCGTATGGGTATTGATACACCGAAAAAAGAAGGTACAACAAAATCATGGAATGAAGAAGCGTTGAATAATGCTCTTGAAGCATTGAGAACTGGACAAATATCAGCTAATAAAGCATCAAAAGCATATGGAATTCCGTCCTCAACATTGTATAAAATAGCTAGACGTGAAGGTATAAGATTAGCTGCACCATTTAATGCTGCACCAACAACATGGACACCTGAAGATTTAGAACGTGCATTGGAAGCAATTCGTGCTGGACACACATCCGTCCAAAAAGCCAGTACAGAATTTGGTATTCCAACggGTACATTGTATGGTAGATGCAAACGTGAAGGTATAGAATTACTTCGTTCTAATCCAACACCATGGTCAGAAGATGCTATGAATGAAGCCTTAGTAGCTGTGAgAGTTGGACATATGTCTATTAATCAGGCTGCCATTCACTACAATCTGCCATATAGTTCATTGTATGGTCGATTCAAACGTGGCAAATATGATACTAGCGCTACaacaaatgttaataatacaAGCAATACAGCGAATAATGCAGCGAATGTTAGTGGAACTATAGATTTGATAGATCACAGTCCAGATAATTCGGTGCATATTTTCCAGCAATTCCAGTACAGTCCTGGACCTTCGAATacgcaacagcaacagcaacagcaacagcaacaacaacagcagcaacaacagcagcaacaacagcaacagcaacaacaacagcagcaacaacagcatcatcatcaacagcagcagcagcaacaacaacaacaacctcAACCGCAACAAACGCCAcagcaacatcaacaacatcaacagcaacaacgacaacaacaacagcagcagcagcaacagcaacaacagcacgTAGTGCAACAATCACATCAACAAATCGTTCATACACTACAACAAGCGCCTCCTCAACCCCAACAACACCATCTCCAACAGCATCCGCAGCATCAACAGCCCCATCCACAACAGCACCATCACCAACAGTAG
- Protein Sequence
- MDDFEFHSDQSKWLPALNVVPLDARRQFDYSRSQGVGLLRTAEHLKIKGLCETAETVDEGLAESAQTTTISVPDTIQQPLTSTPIISHVASNCTQRKSRVRKRSKSPETNSALGGLVTQAYSTGPVVSGTATVPATVVATAGHGVSAITNIHSSAVTIPSSNTIAVTSCPTISTGEVDIKTETIVVEQQSIGGTTIRTAENDTNGQGAPKPAKICKTEDSSNNGSGPVGPGTIVTQIVVSRDSKDKTMTSLGMGMNGGLLGVPMGFLDFAPEPPAPSATPVTEHVDMTCTPSADTRDLSNPTEALDIDNQIAQHIIHRLDQSPMHHIQHQNSTEDNKTNLIQNIKTEVVDVKPHLQQQIHGQQQQQQQQQQRQTQQQQQNHQDMSGTTVMEIDPNNIKHEPGMIITPEIVTMMTTGHMDIYNSDTSEDSLMIANGSPNDNSEPHYTNLDQQTDYKSVPKTWTQEDMNSALDALKNHNMSLTKASVTYGIPSTTLWQRAHRMGIDTPKKEGTTKSWNEEALNNALEALRTGQISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASTEFGIPTGTLYGRCKREGIELLRSNPTPWSEDAMNEALVAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKYDTSATTNVNNTSNTANNAANVSGTIDLIDHSPDNSVHIFQQFQYSPGPSNTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHHHQQQQQQQQQQPQPQQTPQQHQQHQQQQRQQQQQQQQQQQQHVVQQSHQQIVHTLQQAPPQPQQHHLQQHPQHQQPHPQQHHHQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -