Ccar004490.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997756.1:21045782-21050648[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.0038 18.0 2.1 3 23 188 209 187 209 0.96 2 11 0.0021 0.045 14.6 0.4 1 23 273 295 273 295 0.98 3 11 0.97 21 6.2 1.8 5 23 399 417 397 417 0.95 4 11 0.027 0.58 11.1 1.8 1 19 451 469 451 472 0.86 5 11 0.0003 0.0066 17.2 1.5 2 21 561 580 560 581 0.93 6 11 1.1 24 6.0 0.5 3 23 634 655 632 655 0.85 7 11 0.002 0.044 14.6 2.9 2 23 692 713 691 713 0.97 8 11 0.00052 0.011 16.5 4.6 1 21 716 736 716 737 0.94 9 11 0.0038 0.081 13.8 0.1 3 23 776 797 775 797 0.95 10 11 0.038 0.82 10.6 4.3 1 23 810 833 810 833 0.93 11 11 0.011 0.25 12.3 0.7 3 23 860 881 858 881 0.94
Sequence Information
- Coding Sequence
- ATGGTTGAAGAAAATTATGAGTCTGCTTGTAGGCTGTGTTTGAATTCAAACTCCAAGAATATTAATGTGTTTGAAAACAATTCTTATGCTGAGATTATCACAACAATTTCCACATCGTTATCGATACAGATAACTCAAAACGATGATTTCCCGAAATTTTTATGCACTGTTTGCATTGAGAAAGTTGTTTCTTGGGATTCTTTTAAAAAGCTGTGTACTGAGAGTCAAGAGCAATTATATCAATGGCGGGAAAGAAAACTGCAAAAGCAACGTGAAGAAGAAGAAGCAAACGCAATTTTACCAATCTCACGGCTAGAAACGAGCATTCACATAAAAGAAGAATTCATTGAAGATGACTTCGATGATAGTTTTGAATATACTTATGAAACCTTTACTCCGGAATTTAATATCAAATTCGAATCAAGATCCGATGCAGAAAGTTATCAACATTTAGAAAAGAGTATTTCACCTAAAAGTAAAAAGCCTGTTTCTTCTAACGTATCATCAGAAAGAATACCCTTCAATTACAAGTTAGTTGTCGAAATGTATAAGGATAATATTTGTAAATTTTGTTCTAAACAGTTTAACCGAAATTCGAATTTAGTGCAACATTTACGGCTATTTCATATGACAATACCAATGTTTACATGCTTTTGCTGTGGAAAATCATGCAAAACAAAATTGGAAGTACAAACACATCGCAGTATATGTAAAAGAAAATCCTTGGAAAACTCGAAACATTCTAACGAAATTCAATTAAATGATCCTTTAAATATATCTGAAAAACAAGTAGACTCAACTGCTGCCGATTACAAATTTTCGTGTAGTCTTTGTGGAAAACTTTTCAAAACTATAGAAGAATGGACATCGCATAGAGCAACACATGTTCTGAAAATCAATGATGCGACTTCAAACTTCGATGCTTTTAGTGATGAAAAAATTAATTCAGATCCTATCAATACGGAGATGGTTGTGGAACAAAGTTTCTCGGAAGTTTTGAATGGTGTTAAAATTGAGAATGTTCGTTCTGAAAGTGCTGTAACCGAACAGGTGTTAGATATTCCTGAAAAAGTTTCAAATTTGACAGAACCTAATTTAAAACCAGTTAAAAAATCATCAAGATCTAAAAGAAAATTTAATTCACGGCCTAAATTTAGTTATAAAACAAATGATTACACTCGCAATTATCATTGCGAATGTGGTAAAAAATTCATTACAGTTCAAGGCTTTGCATCTCATAGAAAATATCATATGAGAAGAGGTGAATTTTTCTCTCTAAAATCCACAAATAAAAAAAACAAAGATGACGTCTTGGAGTCTCACAAAAAACCTGAAGTGGTTGATGATAAATTTAAATGTAATGGATGCGATAAAGTATTTTCGTTAGCCAGTAAATTTCGCTTTCATAAAAAACGTTGCCCGAATTTAAAACAACAGCTGCCTAATAAAACTGAAGAAGTATCGGAAATTAAAGAAGACAAACCTAAATTAGAAGAAGATGATATCAATGCGGAAACAGAAATTGAACAATTGAATGTCACTGATAAAAGGGACCACACTAGATGTTCATTTTGTAAACGTAAATATGATAATAAACATCGATGTTATAAACATGAAAATAATTGTTTGCAACGACCTACGGATTTGAGAAAATTTATTAAAATTCATCCAGGTGCAGTAAAATGTGGAGGATGTGGTAAATGTTACATTAGCAAAAGTAATTATATGAAACATCGATCTCGTTGCCCTAATGCAGTATTAATTGAAGCGGAATTCCAGGATGAGAATCCTTCATCTTCGACAAATTCATTGCTTTGCTTTTTATGTAAACGGCCATTTTTATCAGCAGGTGCTTTGACTGAACATAAGAAACGATGTTACTTTCAACGTACATCTAGTTGTATTGAATGTAAAAAAGTATTTGATTCATTTATTAATTTTCGCATTCATTATGGACAAAATCATGACAGAAAATCCTTAAGACATGCAAAGAGATTAAAACAAATGCAAACGAAACAGCAGAATAATTTAAATATACCTGGTCCAATAAATAATGGTGTTACAAATACATGGAGTTGCAAAAAATGTAGAAAAGTCTTTCAAACTCTAAAAGGTTATAAATATCATATGAAAACTCATGTTACACATACTTGTCCAAATTGTAATAAATTCTTTTATCATTCAAAGCACTTAACGAAACATTTAGAAGTCTGTCAAAAAATTGAACCTGAAAATCATACGTTTAATTCAACACTTCAAGATCCTTTAGACACGACAACAACATCACCATCGTCTAGTAAACAGATCGTTGGGATTGCCGCACCTTGTGCTGTATGTAAAATGTCATTTGCAACGATTAGTGAATTACGGGAACATATTTTAGTGAAACATAAACCAGCATTTATTCAAGAACGTAAGAAGAAAACTTATTTTTGTCAATTTTGTAAAATGGCATTTGATCGGCATTCAGATTTAAAACAGCATTTTAATGAATATCATGCTGGTAATATACAAAGTGAGTACCCATCGCCACCCGTACTAAAACCAGAGGAACTACAGGATGAAAACAATCAAATATGTTCGTTATGTCAACTGTCTTTCGAAACACAAGATGAATTATTTGAGCATGTTCATTCTCTTCATAATATGGAAATGTGA
- Protein Sequence
- MVEENYESACRLCLNSNSKNINVFENNSYAEIITTISTSLSIQITQNDDFPKFLCTVCIEKVVSWDSFKKLCTESQEQLYQWRERKLQKQREEEEANAILPISRLETSIHIKEEFIEDDFDDSFEYTYETFTPEFNIKFESRSDAESYQHLEKSISPKSKKPVSSNVSSERIPFNYKLVVEMYKDNICKFCSKQFNRNSNLVQHLRLFHMTIPMFTCFCCGKSCKTKLEVQTHRSICKRKSLENSKHSNEIQLNDPLNISEKQVDSTAADYKFSCSLCGKLFKTIEEWTSHRATHVLKINDATSNFDAFSDEKINSDPINTEMVVEQSFSEVLNGVKIENVRSESAVTEQVLDIPEKVSNLTEPNLKPVKKSSRSKRKFNSRPKFSYKTNDYTRNYHCECGKKFITVQGFASHRKYHMRRGEFFSLKSTNKKNKDDVLESHKKPEVVDDKFKCNGCDKVFSLASKFRFHKKRCPNLKQQLPNKTEEVSEIKEDKPKLEEDDINAETEIEQLNVTDKRDHTRCSFCKRKYDNKHRCYKHENNCLQRPTDLRKFIKIHPGAVKCGGCGKCYISKSNYMKHRSRCPNAVLIEAEFQDENPSSSTNSLLCFLCKRPFLSAGALTEHKKRCYFQRTSSCIECKKVFDSFINFRIHYGQNHDRKSLRHAKRLKQMQTKQQNNLNIPGPINNGVTNTWSCKKCRKVFQTLKGYKYHMKTHVTHTCPNCNKFFYHSKHLTKHLEVCQKIEPENHTFNSTLQDPLDTTTTSPSSSKQIVGIAAPCAVCKMSFATISELREHILVKHKPAFIQERKKKTYFCQFCKMAFDRHSDLKQHFNEYHAGNIQSEYPSPPVLKPEELQDENNQICSLCQLSFETQDELFEHVHSLHNMEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -