Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:29440158-29445754[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0026 0.055 14.3 0.3 2 23 265 287 264 287 0.93

2 8 0.045 0.97 10.4 0.8 3 23 323 343 322 343 0.96

3 8 4.3e-05 0.00093 19.9 0.4 3 23 371 392 370 392 0.97

4 8 3.6 79 4.4 0.4 3 23 401 418 400 419 0.72

5 8 0.083 1.8 9.6 0.3 3 23 449 469 448 469 0.93

6 8 0.011 0.24 12.3 1.8 1 23 475 498 475 498 0.97

7 8 4.6e-05 0.001 19.8 2.4 1 23 504 526 504 526 0.97

8 8 0.0026 0.055 14.3 2.3 1 23 532 555 532 555 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0026	0.055	14.3	0.3	2	23	265	287	264	287	0.93
2	8	0.045	0.97	10.4	0.8	3	23	323	343	322	343	0.96
3	8	4.3e-05	0.00093	19.9	0.4	3	23	371	392	370	392	0.97
4	8	3.6	79	4.4	0.4	3	23	401	418	400	419	0.72
5	8	0.083	1.8	9.6	0.3	3	23	449	469	448	469	0.93
6	8	0.011	0.24	12.3	1.8	1	23	475	498	475	498	0.97
7	8	4.6e-05	0.001	19.8	2.4	1	23	504	526	504	526	0.97
8	8	0.0026	0.055	14.3	2.3	1	23	532	555	532	555	0.97

Sequence Information

Coding Sequence: ATGCGACATAGTGTATGTTTCTATCGTGGGTGTTATAATTCGAAAAAATCGCGACCTGATTTGACATTTCACCGATTTCCACCGGACAAAGAAAGATTGATCGTATGGGTAAAGAGATCCGGAAACGGTGCTATTTCAAAAGAAGACTGCAAAGCATGGAAGCATCGGACGATGTGTTCTATTCATTTTAACGTAGAAGATTATAAGATAGATTGTCGCAAACCAATATTGCATTCAACAGCTATACCCAAGGAATTTCATCCCTCAGCGGATCATGGAAGTGTCCAAAATGAAATATCCATCAAAGGAGAAATTGAATGTCTATCTAACGATTCTAAACCTAAGGAATCTGAATGTACAACTGTTGAGAAATGGAACAATAAATGTATTACATGTTTAAAAGATGATGTACAAATGGAAACTCTCAGTTCACTTAGTCTTTTACCAGAATTTAAAGAACTCTTTAAGTATTTAAGAATTGAAGACTTTCTCAATGAAACTACCTTAAATTCGGTGTGCTCCAATTGTGTATTACAAATGCATAACATGTTAAGTTTTAAAAGACAATGTGAAGAATCGGTAGAAAAATTAGGATTATTTACAACAGCTCTAATATCTGAAACAGTAAAATCATCAATCGTTCATAAAGCAACAAAAACCGAAAGTGAAGAAGAAATAAGTTCAAACTTTTTAGTACAAATATCCCCAGATGTTGAGGAAGAACCTGACAAAATAGAACATACTGAAATTGAACAGGAATTCGATTCGTTTTCGTTCGATGAAGAATGTGTATCTTGCGTAAATTGTAATGAAAAATTTAACAACGAACGTTGGCTAAGAAGACATCAAATTCTTATCCATGGATTAAAAAACTGTATACAGGAATGTTATGATTGTCTCCAACTACATTTTATAAATTATGAGAATCGATTAAAGATTCATAATGAGTGTTATCATGAAAATATATGCAGTGTCTGTGATTTGAAATTTCAAACAATAATTCATTTAGCTAAACATAGATTGTTACATACATTGAGTGATCCTAAAAAACACCTACCACTTTCTGGCTTTGACGGTTTTAAATCACGAAGACCGCGCGGAAAGGTTGCCTGTGCTCAATGTGGAAAATTTTATAATACAGCCAAATTATTACGTAGACATATCCGAAGTGTACACAATCCAAATAGAGTTAAAATGGCTTGTACAATTTGCAGACGATCTGTTTACAACTTGAATGAACATTTAAAATGGCATCAGACACATAAATTTCAACATAAAATTGCAGTTCGACGAAAGTCAGTTCCAAGAAAGAAAAAATATGACTTCATTGAACCAAGGGGACTTTGTACATATTGTGGAAAATTATATGTCCGAACCTCTTTAAAAAAACATATTCTGGCGGTACATTTGAAAAAAAAAAATTATGAATGCATGTACTGTCATAAAATGTTTGTTTCAACTAATGTAAGAAACAGACATATTAAAGTAGCTCATTTAAAACTAAAACGTTTTTCCTGTGGTTATTGCGACAAAAAATTTTCGACGAAATTTAACGCACAAAAGCACAGATTAATACATACTAAAGAAAAACCTTTTAAATGCCAATATTGTGATGAACTTTTCCGTTACCCTGAGAGTATTAAACACCATATAATACGAAAACATGGAGTGAATTCCAGCAGTTTCAGAATAAATATTTGTACAATTTTAAACTCACTTGAAAGTGGAGGTAAAATAATTTCTGTAACTTGA
Protein Sequence: MRHSVCFYRGCYNSKKSRPDLTFHRFPPDKERLIVWVKRSGNGAISKEDCKAWKHRTMCSIHFNVEDYKIDCRKPILHSTAIPKEFHPSADHGSVQNEISIKGEIECLSNDSKPKESECTTVEKWNNKCITCLKDDVQMETLSSLSLLPEFKELFKYLRIEDFLNETTLNSVCSNCVLQMHNMLSFKRQCEESVEKLGLFTTALISETVKSSIVHKATKTESEEEISSNFLVQISPDVEEEPDKIEHTEIEQEFDSFSFDEECVSCVNCNEKFNNERWLRRHQILIHGLKNCIQECYDCLQLHFINYENRLKIHNECYHENICSVCDLKFQTIIHLAKHRLLHTLSDPKKHLPLSGFDGFKSRRPRGKVACAQCGKFYNTAKLLRRHIRSVHNPNRVKMACTICRRSVYNLNEHLKWHQTHKFQHKIAVRRKSVPRKKKYDFIEPRGLCTYCGKLYVRTSLKKHILAVHLKKKNYECMYCHKMFVSTNVRNRHIKVAHLKLKRFSCGYCDKKFSTKFNAQKHRLIHTKEKPFKCQYCDELFRYPESIKHHIIRKHGVNSSSFRINICTILNSLESGGKIISVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332469;
90% Identity: iTF_00332469;
80% Identity: iTF_00332469;