Basic Information

Insect: Chrysoperla carnea
Gene Symbol: SCAND3
Assembly: GCA_905475395.1
Location: FR997755.1:2116659-2121530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00047 0.01 16.6 1.4 1 23 244 266 244 266 0.99

2 9 0.00048 0.01 16.6 2.6 1 23 272 294 272 294 0.98

3 9 0.14 3.1 8.8 0.7 1 23 301 324 301 324 0.95

4 9 0.0011 0.024 15.4 5.3 1 23 343 365 343 365 0.97

5 9 3.3e-05 0.00071 20.3 4.5 1 23 371 393 371 393 0.97

6 9 8.9e-05 0.0019 18.9 1.2 1 23 399 421 399 421 0.96

7 9 0.0016 0.035 14.9 2.0 1 23 427 449 427 449 0.97

8 9 0.00067 0.015 16.1 2.2 1 23 455 477 455 477 0.96

9 9 0.017 0.37 11.7 3.9 1 23 483 507 483 507 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00047	0.01	16.6	1.4	1	23	244	266	244	266	0.99
2	9	0.00048	0.01	16.6	2.6	1	23	272	294	272	294	0.98
3	9	0.14	3.1	8.8	0.7	1	23	301	324	301	324	0.95
4	9	0.0011	0.024	15.4	5.3	1	23	343	365	343	365	0.97
5	9	3.3e-05	0.00071	20.3	4.5	1	23	371	393	371	393	0.97
6	9	8.9e-05	0.0019	18.9	1.2	1	23	399	421	399	421	0.96
7	9	0.0016	0.035	14.9	2.0	1	23	427	449	427	449	0.97
8	9	0.00067	0.015	16.1	2.2	1	23	455	477	455	477	0.96
9	9	0.017	0.37	11.7	3.9	1	23	483	507	483	507	0.97

Sequence Information

Coding Sequence: ATGCAAGATGACCAAAATGATTCTGGTGGGGGCTCCGACGATGATTATGAAGATATTAAATTGGACTTGCGACAAAACACTTCGTGGACGCGAAAATCTAAGACAAACAGAAAAAATGATGAAACAGTACAAGAGGAAATAGTTTCAGATATTGAAGAATTGAAAAAAGCCTTCTTTAAAATCGTTGATAAAATGTCTGAGAAAGCAAACGGTCATTTAATAACAGATGAAACGTATCAACGATTTATACGCGAAGTCGAAGATGCCGAAACAAAGACAACCACAAAAACTGCAATGGACTATCGTCGAATAAAACGTTTTGAAATATTATTAACCGATGAAAATGTGAAAAAATTAATTGCACGACGAAAGAAAGCATCAGAAACAATAAAATATTTTGTTCCGAAGAGTGAAATGTTTGAATTGATACATGACGCCCATCTTAAATGTAAACACGGAAAGTTACGTCGTACCGAGCATCTTTTAAAAATGAAATATAAAAATTTATCACGTGAAATTATTATGGTCTATTTGAATTTATGTCAAGTGTGTAAAAAACGAAAACTGAAAATACGGGAACGTTTAAAATTCAAGGAGGCACAAAGTCAAAATCGATCAGTAAATAAAGCACCTACTTTCACGTTAAAATGTCACCAATGTAGTGATTTATATCACACCGAAAAAGATTTACGTTACCATTTTGAAAGTGTTCATGAAAAATCAGTCGAATATCAATGTTTGGAATGTTCGAAAATTTTTGTGAATTATTTAACATTTCGCAGCCATATTAGGAGTCATAAAAATCAATTTAAATTTAGATGTGAAATCTGTGATAACTTCTTTTCATCAAATAAAAAATTACAAAATCATAAAGAGCGTCATAATAAAATTCGTAAGAAATATTTTTGTAGTTCGTGCGGTAAGGGTTTCCTAAATGATAAATATTTAACAATCCATGAAAAACGAGCACATTCAACACCAATCAATGATGAGACAGGCGATGACAAGGATCGAATTGTTAGGAATCATGAATGCGATGAATGTCATAAAATGTTTGCATCCGTTCATAGTCTTAATAATCATAAAAAAGTACATGCTGGTATTCGAGAACATACGTGCGAACATTGCGGTAAAAGTTTTATTCATAAATCTTATTTAGATGATCATATTGCATCTCATAGCAGCGAAAGACCTTTTAAATGTGAGACATGCTCAGCCAGTTTTAAATCAAAAGCATACTTACGACGTCACCTAGTTCTACACACAGCTGTCAAATCTCATCAATGCCATATTTGCGGGAAAAAATTTCTTCGAAAGCCAGCATTAATCGAACATTCGATCACACACACAGATTTGTATCCGTTTAAATGTAAATTTTGTGATAAAAGTTTTCGAGCGAAGAAAAATGTTGTGAAACATGAACTGTTACATACCGGAGAAAAACCATACTCTTGTGATACATGTGAAAATCGTTATTTCACGAGTTCTTCAAATTATCATAGTCATATGAGACGAGTCCATGGTATTGTTCGCGTAAAAAAGGAGAATCCAATTATTGAAACGAAAATCGGAAATACAGAAATTTTCGATGGCAATAAATAA
Protein Sequence: MQDDQNDSGGGSDDDYEDIKLDLRQNTSWTRKSKTNRKNDETVQEEIVSDIEELKKAFFKIVDKMSEKANGHLITDETYQRFIREVEDAETKTTTKTAMDYRRIKRFEILLTDENVKKLIARRKKASETIKYFVPKSEMFELIHDAHLKCKHGKLRRTEHLLKMKYKNLSREIIMVYLNLCQVCKKRKLKIRERLKFKEAQSQNRSVNKAPTFTLKCHQCSDLYHTEKDLRYHFESVHEKSVEYQCLECSKIFVNYLTFRSHIRSHKNQFKFRCEICDNFFSSNKKLQNHKERHNKIRKKYFCSSCGKGFLNDKYLTIHEKRAHSTPINDETGDDKDRIVRNHECDECHKMFASVHSLNNHKKVHAGIREHTCEHCGKSFIHKSYLDDHIASHSSERPFKCETCSASFKSKAYLRRHLVLHTAVKSHQCHICGKKFLRKPALIEHSITHTDLYPFKCKFCDKSFRAKKNVVKHELLHTGEKPYSCDTCENRYFTSSSNYHSHMRRVHGIVRVKKENPIIETKIGNTEIFDGNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00333437;
90% Identity: -
80% Identity: -