Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:31792108-31801234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.077 1.7 9.7 6.2 1 23 284 307 284 307 0.92

2 14 0.065 1.4 9.9 0.7 2 23 514 536 513 536 0.92

3 14 0.00088 0.019 15.8 0.2 2 23 543 565 542 565 0.93

4 14 5.8 1.2e+02 3.8 1.5 9 23 575 589 573 594 0.67

5 14 0.0034 0.073 13.9 0.3 2 23 642 664 641 664 0.92

6 14 0.28 6 7.9 4.2 2 23 744 766 743 766 0.96

7 14 0.00062 0.013 16.3 0.4 1 23 802 824 802 824 0.96

8 14 0.00011 0.0023 18.7 1.5 1 23 829 851 829 851 0.98

9 14 9.1e-06 0.0002 22.0 6.4 1 23 856 878 856 878 0.98

10 14 0.00023 0.0049 17.6 1.1 1 23 884 906 884 906 0.98

11 14 0.00058 0.013 16.3 5.4 2 23 913 934 912 934 0.96

12 14 0.00062 0.013 16.3 0.5 2 23 951 973 950 973 0.96

13 14 0.00031 0.0066 17.2 3.7 1 23 980 1002 980 1002 0.98

14 14 2.2 48 5.1 0.0 2 23 1009 1031 1008 1031 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.077	1.7	9.7	6.2	1	23	284	307	284	307	0.92
2	14	0.065	1.4	9.9	0.7	2	23	514	536	513	536	0.92
3	14	0.00088	0.019	15.8	0.2	2	23	543	565	542	565	0.93
4	14	5.8	1.2e+02	3.8	1.5	9	23	575	589	573	594	0.67
5	14	0.0034	0.073	13.9	0.3	2	23	642	664	641	664	0.92
6	14	0.28	6	7.9	4.2	2	23	744	766	743	766	0.96
7	14	0.00062	0.013	16.3	0.4	1	23	802	824	802	824	0.96
8	14	0.00011	0.0023	18.7	1.5	1	23	829	851	829	851	0.98
9	14	9.1e-06	0.0002	22.0	6.4	1	23	856	878	856	878	0.98
10	14	0.00023	0.0049	17.6	1.1	1	23	884	906	884	906	0.98
11	14	0.00058	0.013	16.3	5.4	2	23	913	934	912	934	0.96
12	14	0.00062	0.013	16.3	0.5	2	23	951	973	950	973	0.96
13	14	0.00031	0.0066	17.2	3.7	1	23	980	1002	980	1002	0.98
14	14	2.2	48	5.1	0.0	2	23	1009	1031	1008	1031	0.95

Sequence Information

Coding Sequence: ATGCAGTCTCTAACGGAAAAATTAATTCGCCCAGAGAAAATTATTCCAAAATTCATAGACAAAAATAAAAAGGCGGACGTTAATTCTGGTAAACGATTTATTAATGAAATATTAATAGAATGTAATAATCGAGAACGTTTAATTGATGAAGATGCAATAAATAATGATTTAAATAAATCGGCTACAATTGGGCCACCTTTTGTTTGTATAATATGTAAACAATGGTTTCTTTCCAAAGAAAAATTATTGATACATTATATAGGAAATCATGAAAAAATTCCATGCCATATGTGTTTACTGGTATTCGATACGAGAGAACTTTGTACAATACACGAAAATAAAGCACATTATCCATTATACTGTGAACTATGTCACAATGAATTTATTGATTTACAAATACTTGAGATGCATTACAAATCCGCACACAATACAATGTCATGCCGATTTTGTAATCTTTTAATTCAACCACAAGCTTGTTACACGACCCACATTAATCGTAAACATAATGTGTACGATGAATACAATCAGAATGAGAATTTATTAATTATCGATCAATGGTTTGATGAAAAATGGAATTTTCGATGTCGTATGTGTAATAAAATTCGACCAAAGAAAGATGTTTATGGTCATTTTCGTATGCATCATAAAATAACTGCAAATTCTTTTATAAATGTTATTCAATACGAGGAAATCGAATTGGAATTAAATGGTAGCATAGATGAGGTGGTTCCAATGAAAAAAATAACGTTAAAAACAGCTGAAGTAAAATCAGAACCAACTGAGGAATGTTCAATATGTGCCAACTCAAAAGTCCCACTAATATTTCATCAAGTTTACTGCATGAAAAAATTCGCTTGTCATTATTGTTTTGAAACGTTCGACAACTCTACGCATTTACATACGCATAAAGAGCTGGAACATAGATCTTTTCGTTGTGATCTTGGATGCGAAAATATTGTTAGTATTAATGAACGTGAACTTGACGTACATTATAAAAAATTCCACGATGTTATAGCGTGTAAATTTTGTGAAGTATGCGTTCACGCGGATCAAAACAAATATATTGTACATTTAATTAACGAACATTCAGTTAAGGATCTTGCAGAAATATTCGACACTGATCTATTATTTCAGGAGACATTGTTGAACAATAATAGAATTATCGTTTGTTCTTTGTGCGAACAAAACATCACAGACCTGATGCAAAACGTTGATGGTTTGTATTCGCATTTCAACGAACAACATTCGATTATATTAAAAACAATTGTGAGTTATAATCAATCGAATCCATTTTCAACAAACAAAATTGAACCAAAATCGAATTCAGAAGAGCATGTTCCTAGTCATGATGAAGACGAAAATAATAAAGACATAGAAATAGGTGGTATTTTTGAAGATATTGACCCAAAATATATAGAATGTTCAATTTATGATGGAAATAGCGATGATGAAAATTACGATCAACTTTTAAAAATTAAAGAAGAGCCATTAGATGATTTTGATGACGACTTAATTCCATTAAATGATTCATCCGATTTAATTTGTGAATTATGCGAATTTAAATTTAATTCCAAAAATGATTTATTGGAACATATTCATGCTCAACATGGTTTCAATGCAAATTTATCATGCAACGATTGCTTGAAAAGCTTTGTAAATGAAAGTGAACTAGAATTACATATAGATAATACTCACAGGTTAAAAGAAGGCGACCTTAATTGCCCGTTTTGTACACTTGTGAGTTTTAAGAAACATATTCAACGACATTTACAAATGGAACATAGTCAGGAAATCGAGACAAATCTAGCGACTGCTGATGTTGGATATAAATGCCGTTTTTGTGATGAATTGTTTTGGAAGCAAATGGATCGAAATTTTCATGAAATTAAAAAACATTTCAAATTTAATGAACATTTATTTGTTAGATGTTTTGTTTGTTATGAAGTTTTTAGCCGAGAGTACTCTTTACGTAAACATGTGGAAGAATCTCATGAACAGAAATTCGATCTATCTAAAATAGTATATAAATGTTTACAATGTTATGTTCTGTTGCCTCATTTACAAACAATGAAAGAACATTTTTCATCTCAACATTCAGAACTGGTTATTTATAAGTGCGCGTATGATAATTGCACTTTTTGGAATTCTACTAAATCAGCGATCGAAATGCATATTAAGGAAAAACATAAAAAATCTAAAGAGAAAAATTTAGTAGTATTTACACCAAAACCGTGTGAAATGTGTGGCAAACATTTATGTAGTCAAAGGTCAGCAAAAATTCATTATCGAATGAAACATACGGGTGAACGGATTGGTTTTGGATGTCGTTTGTGTTCAGAAAGATTCGATACTATTGAAAAAAGGAAGTTGCATTATACCATGGTCCATTCTGGAATTCGAGCATTTATTTGTTCTGTATGTGGGAAAGGTTTTAATAGTAAATCAGGTTTATATGGTCACAAGCAACTGCATAATAACAATAGTTTTGAATGTGAATATTGTCATAAAATATTTGTTCGAAAGGATACTTACAGCGAACATATTTTAATACATTCAGGACCTCGACATCAATGTCAACATTGTTCAAGATCGTTTACTCAACGTTCAAATTTAATTCGACACACTCGTATTCATACGGGTGAAAAACCATATCAATGTCCAATGTGTCCAAAGAAATTTAGTGATAAGGGTGCATGCAATTCTCATGTTCGTGTACATACTCGTGAAGAAGTATGCTCATGTCCATTTTGTGGAAAAACCTATAGTAAAAAACAAAAATTGAAATATCATCTAAAAACACATACTGGAGAACAATTGGGAAAGAAGCAAAATGGAGAAGGAAAAACGTTAATTTGTAGTGAATGTAACGAAGGTTTTAGTGATGAACGATATTTACATCGACATATTATAACAAGTCATGTTGAAATGGCTTGTAATTATAAATGTCAAGTTTGTAATCAAAAATTTATTACACAAAATCATTTAAATTCACATACGTTATCGCATTTTGGTGTCAAACATATAAAATGTTTATTATGCGAAGCTGCTTATGCATCGAATGAAAGTATTATCGATCATTTACGTGAAGATCATAAAATATCAAATGAAGAAGTTGGAAAGTATTTCAAACAATTGTCTTCCGAAGATGTTGAAAAACTACTAACAACGTGCTTGGAAAAGGACTCAAATTCGGTGAATATCGTGTTTAGCGATATTAAACCAGGTAATATACCATCACCACAAAAACAAAAAGGTAATAAAGATATCAAAGCTAAAAAAACGAATAATAAGCGAAGAAAAAAGGAAATTGTTAAAGATATTAATGATATTGAATTTGGAAACACATTAACTGCAACAAAAAGTCGACAAGTTAAGAAACCAATTCGATATGTGGTGGAGACAAATGATGTTAAATTACCTGATCCTAAAAAGCCAGAAACTATTGTTAATGTAGATAAATTCTTGGAAGTTAATATTAAGGAAGAAATAGTTGATGATTACGATAGTGAAAGTATTTAA
Protein Sequence: MQSLTEKLIRPEKIIPKFIDKNKKADVNSGKRFINEILIECNNRERLIDEDAINNDLNKSATIGPPFVCIICKQWFLSKEKLLIHYIGNHEKIPCHMCLLVFDTRELCTIHENKAHYPLYCELCHNEFIDLQILEMHYKSAHNTMSCRFCNLLIQPQACYTTHINRKHNVYDEYNQNENLLIIDQWFDEKWNFRCRMCNKIRPKKDVYGHFRMHHKITANSFINVIQYEEIELELNGSIDEVVPMKKITLKTAEVKSEPTEECSICANSKVPLIFHQVYCMKKFACHYCFETFDNSTHLHTHKELEHRSFRCDLGCENIVSINERELDVHYKKFHDVIACKFCEVCVHADQNKYIVHLINEHSVKDLAEIFDTDLLFQETLLNNNRIIVCSLCEQNITDLMQNVDGLYSHFNEQHSIILKTIVSYNQSNPFSTNKIEPKSNSEEHVPSHDEDENNKDIEIGGIFEDIDPKYIECSIYDGNSDDENYDQLLKIKEEPLDDFDDDLIPLNDSSDLICELCEFKFNSKNDLLEHIHAQHGFNANLSCNDCLKSFVNESELELHIDNTHRLKEGDLNCPFCTLVSFKKHIQRHLQMEHSQEIETNLATADVGYKCRFCDELFWKQMDRNFHEIKKHFKFNEHLFVRCFVCYEVFSREYSLRKHVEESHEQKFDLSKIVYKCLQCYVLLPHLQTMKEHFSSQHSELVIYKCAYDNCTFWNSTKSAIEMHIKEKHKKSKEKNLVVFTPKPCEMCGKHLCSQRSAKIHYRMKHTGERIGFGCRLCSERFDTIEKRKLHYTMVHSGIRAFICSVCGKGFNSKSGLYGHKQLHNNNSFECEYCHKIFVRKDTYSEHILIHSGPRHQCQHCSRSFTQRSNLIRHTRIHTGEKPYQCPMCPKKFSDKGACNSHVRVHTREEVCSCPFCGKTYSKKQKLKYHLKTHTGEQLGKKQNGEGKTLICSECNEGFSDERYLHRHIITSHVEMACNYKCQVCNQKFITQNHLNSHTLSHFGVKHIKCLLCEAAYASNESIIDHLREDHKISNEEVGKYFKQLSSEDVEKLLTTCLEKDSNSVNIVFSDIKPGNIPSPQKQKGNKDIKAKKTNNKRRKKEIVKDINDIEFGNTLTATKSRQVKKPIRYVVETNDVKLPDPKKPETIVNVDKFLEVNIKEEIVDDYDSESI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061260;
90% Identity: -
80% Identity: -