Ccar022762.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- RREB1
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:127664324-127667666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.073 1.6 9.8 1.6 2 23 195 217 194 217 0.94 2 10 0.023 0.5 11.3 3.8 2 23 223 245 222 245 0.94 3 10 0.0011 0.023 15.5 3.7 2 23 251 272 250 272 0.96 4 10 0.029 0.63 11.0 4.6 2 23 276 298 275 298 0.91 5 10 0.11 2.4 9.1 2.2 2 23 306 326 305 326 0.97 6 10 0.0021 0.046 14.6 0.2 2 23 334 356 333 356 0.96 7 10 0.0042 0.09 13.7 0.6 3 23 367 387 365 387 0.95 8 10 2.5e-05 0.00053 20.7 1.4 1 23 393 416 393 416 0.94 9 10 0.0016 0.035 14.9 2.9 1 23 422 444 422 444 0.99 10 10 3.7e-05 0.0008 20.1 2.1 1 23 450 472 450 472 0.98
Sequence Information
- Coding Sequence
- ATGGACACGTGTGTAGTTGATAATTTTGAAAAAGTTTGTCGTATTTGTATGAAATTTAATAAAACATTTCTATCAATTACCTCATTTCAAATAATTGATATGATAATAGCATTTGCTTCTGTACAGATTTGGGAAAATGATGATCTACCAAATCAAATATGCCACACTTGTTTTCTTCAATTACAAAATACCATCAATTTCAAACAATTATGTGAAAATTCAGATAATACATTTCGCCAAATTATTCAACAAAATAAAATTAATTTGTCTAATAATCAAAATGACCTTCATGACGTTAAAGATGAGAAATTTGAAGATTACGCTGATGATATACCTCTAATAGATATCAAAGAAGAAGAAGATATTTCTGAAAATATCACAAATGAAAATACGTTGGAAAATGAAAAAATTAAACTTGGTCATAATAAAAATGATTCAAAAAAATCGGAAACTAACACAGTGCTGGAAATTAAAAACAAAACCAAGCCGGAATCAAATAAAATGCAAATGTCAACCAAATCCGATAAGGGAAGTGATACCTGTGAAGATACTAAAGATGATGAAAATGTAGAAGAATCCGTTACTTGCGAGAAATGTAATAAAGAATTTAAAAAAGTATGGGTATTAGGTCAACATATGCATAGTAAACACAGAGCTAAACCATTAAAATGCAATAAATGTGAATTAAAATTTTATCATCCATTACATTTAAAAGAACACCAGGAATTAACGCACAATCCATCGAATCTTACATGCAATAAATGTAACAAAGTATGCACAAGTATTTACACCTTAAAACGTCATAAACTGGTACATTCATCATTAAATTGCAAAAGATGTGACAAATTATTTAAAGATCGGTGTTCATTAAAGAAACATAATAAGGAAGTACATTCACGCATAGATAAGTATGTAACATGTCATATTTGTGGTAATTCAATAACGAAAAACGCCCTACATCGTCATTTAGAAACCCATAAAGAACATCGTGATAAAATTACTTGTGACATATGTTCAAAAGAATTAATTAGTCAGCGAACGTTACAGATGCATATTAGGCAAGTGCATGGGGATCAAAAAACTATACGTAAACATTTATGTAACATTTGTGGATTTGCAGCACGTAAATTTTCTGACTTACAAAGACATTTAATAATACATTCAAGCGAACGTCCGTACGCGTGTGACCGTTGTGAAAAAACGTATCGACGACCAGATAATCTCAAACAACATATCTCACATGTACACTTAAATGAACGAAAGTTTCAATGTAAATTTTGTTCACAAGCTTTTCCTGAAAGAAGAACTTTAATACATCACGTACGACGACATACTGGCGAAATGCCACATAAGTGCGAAGTGTGTGGTAAAGCATTTGCGCAAAAATGTGCATTGGTAACTCATACGAAAATACATACAAACACAAGAGAGATTCTCACACAAAGTTTAGATGGCAGCATTGTAACAAATACAACAAATACTTAA
- Protein Sequence
- MDTCVVDNFEKVCRICMKFNKTFLSITSFQIIDMIIAFASVQIWENDDLPNQICHTCFLQLQNTINFKQLCENSDNTFRQIIQQNKINLSNNQNDLHDVKDEKFEDYADDIPLIDIKEEEDISENITNENTLENEKIKLGHNKNDSKKSETNTVLEIKNKTKPESNKMQMSTKSDKGSDTCEDTKDDENVEESVTCEKCNKEFKKVWVLGQHMHSKHRAKPLKCNKCELKFYHPLHLKEHQELTHNPSNLTCNKCNKVCTSIYTLKRHKLVHSSLNCKRCDKLFKDRCSLKKHNKEVHSRIDKYVTCHICGNSITKNALHRHLETHKEHRDKITCDICSKELISQRTLQMHIRQVHGDQKTIRKHLCNICGFAARKFSDLQRHLIIHSSERPYACDRCEKTYRRPDNLKQHISHVHLNERKFQCKFCSQAFPERRTLIHHVRRHTGEMPHKCEVCGKAFAQKCALVTHTKIHTNTREILTQSLDGSIVTNTTNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333365;
- 90% Identity
- -
- 80% Identity
- -