Ccar007302.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:33397450-33400930[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.2 26 5.9 3.8 2 23 193 213 192 213 0.95 2 11 0.043 0.93 10.5 2.3 1 19 219 237 219 242 0.89 3 11 0.011 0.24 12.3 0.3 2 23 249 270 248 270 0.97 4 11 0.00058 0.013 16.3 1.0 2 23 276 297 275 297 0.97 5 11 0.0078 0.17 12.8 2.0 3 23 306 327 304 327 0.94 6 11 6.5 1.4e+02 3.6 0.1 3 9 337 343 336 355 0.89 7 11 0.00023 0.005 17.6 1.9 1 23 361 384 361 384 0.98 8 11 0.00021 0.0044 17.8 3.9 3 23 399 419 398 419 0.98 9 11 0.012 0.25 12.3 5.4 1 23 425 447 425 447 0.98 10 11 0.00015 0.0032 18.2 3.1 1 23 453 475 453 475 0.99 11 11 1.9e-06 4.2e-05 24.1 1.6 1 23 481 503 481 503 0.98
Sequence Information
- Coding Sequence
- ATGTCACATGCATTAAAAAAATCGGATTTTAATTTAATATGTCGAACCTGTTTATCACATAAATCAGAAATGCTCTCTATAAAATCATTAGAACAATTAAAAATTGTTTTAATTAAATATATTGGGTTAAAACTGGAAGAAACTATGAACACCCTGCCAAATTTAATTTGTATGGATTGCAAAGAAGATTTAGAGAAATTTATACAATTTAAAGATCAATGCATTAATTCTGAAACAGTATTACTAAAAATCTTGGATACCGATGAAACTATTTATGAAGAAACAACTGCAGTTAAGGAAGAATTTGATAATTTAAGTATTTATGGAGAAAAAATTAATAAACAGGATGTAAAAGATGAATTTGATAATTCAAATAAAAACTGTTTGAATGATATTGACAATAATCGAATTTCATCACAAGAAAATATTGATAATTTTAGTGATACTGATAGTGATGAAAATTTTGATAATGAGGATATAAAGATTGGTGATCAATTATTTTTATTTGATAAAGATATTAAAAATAAACAATGTGGAAGTCCACCATTGACGGATAAGGAAAATAATGATTTAATTACGTGTAAATATTGTAATAAACGAATTCGTCATAATACGATCAAAGGTCATATGCGTCGACACATCCAACCAAAAAAACACAAATGCGATCAATGTTCAAAAGCGTATCGAGAACCCAACGAACTAGCCAAACATTGTATACGTGTCCATAACCATAAGGAAACCGTTCAGTGTAAAGTCTGCAACGAAGTATTCTCAATACAAGCTCAATTAGATTTTCATATGAAACGTCATTTTAAAAAGAAAAGCGTATGTGATACATGTGGAAAAGAATTCTTTAATATTGCAAAATTAAAACGGCATAAACAATCGCATGAAACTCGTGAAAAAACCATATTTTGCTTATTGTGTGATCGTATGTTTGCACGCCACAGTACGTTAATGATTCACAACAAAAAATATCATTCGGGTAAACCGTTAATGAAGAAAATTTGTAATATTTGTGGGAAATCGGTGCTAAATATTAAAACACATACTTTACAAAAACACTCGACAGAACGTCCTTTTAAGTGTACACTTTGTTCAAAATCTTACGTAATTAAATCTCAATTATACAATCATATTAAAAGTCAACATGATAATGATGTGGGAGGCGATGATAAAAAATTCACTGTATTATGTAGTACCTGCGGAAAATGTTGTAGATCAAATGCGGATTTAAAGGTTCATATGATCTCACATACAAATGAGCAATTATTTCAATGTCATATTTGTGAGAAGAAATATAAATCGGCGCAAGGTTTAAAATGTCATATTAATAAGCATAATAATTTACGACCGTATTCTTGTACTCACTGCCCAAAAGCATTTTATACGAGTCAAATATTAAAGAACCATTTAAGGACGCATACAGGAGAAAGGCCCTACGAATGTCAATTATGTGGACGGGCATTTTCACAAAGTTGTGCGTTGAAAACGCATATGAAAATTCATGGCGCATAA
- Protein Sequence
- MSHALKKSDFNLICRTCLSHKSEMLSIKSLEQLKIVLIKYIGLKLEETMNTLPNLICMDCKEDLEKFIQFKDQCINSETVLLKILDTDETIYEETTAVKEEFDNLSIYGEKINKQDVKDEFDNSNKNCLNDIDNNRISSQENIDNFSDTDSDENFDNEDIKIGDQLFLFDKDIKNKQCGSPPLTDKENNDLITCKYCNKRIRHNTIKGHMRRHIQPKKHKCDQCSKAYREPNELAKHCIRVHNHKETVQCKVCNEVFSIQAQLDFHMKRHFKKKSVCDTCGKEFFNIAKLKRHKQSHETREKTIFCLLCDRMFARHSTLMIHNKKYHSGKPLMKKICNICGKSVLNIKTHTLQKHSTERPFKCTLCSKSYVIKSQLYNHIKSQHDNDVGGDDKKFTVLCSTCGKCCRSNADLKVHMISHTNEQLFQCHICEKKYKSAQGLKCHINKHNNLRPYSCTHCPKAFYTSQILKNHLRTHTGERPYECQLCGRAFSQSCALKTHMKIHGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061175;
- 90% Identity
- -
- 80% Identity
- -