Ccar020846.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:83154770-83164437[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0012 0.026 15.4 2.1 1 23 885 907 885 907 0.98 2 10 0.32 6.9 7.7 3.2 1 23 916 938 916 939 0.93 3 10 0.0071 0.15 12.9 4.4 2 23 957 978 956 978 0.95 4 10 0.00023 0.0049 17.6 0.9 1 23 981 1003 981 1003 0.99 5 10 0.033 0.71 10.8 3.3 1 23 1065 1087 1065 1087 0.97 6 10 0.04 0.86 10.6 0.6 2 22 1091 1111 1091 1111 0.95 7 10 0.00023 0.0049 17.6 4.1 1 23 1147 1169 1147 1169 0.98 8 10 0.0011 0.024 15.4 0.6 2 23 1223 1244 1222 1244 0.97 9 10 0.00012 0.0025 18.6 0.3 2 23 1250 1271 1250 1271 0.98 10 10 0.0025 0.055 14.3 0.5 2 21 1279 1298 1278 1299 0.93
Sequence Information
- Coding Sequence
- ATGGCTGAAGACGAAAATATTTATTATATTCAAAAACAAGAGGATGGTACACATCTTTCATGTGTTTGGCAAGATGCATACACTGAGGTGGTTGCATACGAAGAAAATGTTCAAGACAATAGTAATCTAAATATTACATATGTCACTGAAGATAATGAGAGTTCAAATGAAAATTATGAAACTGCTGGAGAAGATTCACAATATTATTCGGTGATTGAAACCAATGAAACGTTAGATCACGATCAAACTTTGCAACCTATTGAGCCTCAAATGAATTTAAATGAGGATTTTAAAGGTAATCTTACAGTTATACAATATCCTACGGAAGATGTGAGTGTTAAAGATGAGTTAATTGAAACAAAAGTAGAAAATTGTGATAATACTATTGTGGAAGATGATGATCAAGTAATTCTTTATAAAATTGAAGATTCGAATGAATTATTTGCTGTGCAAATTGCTCGAGATGCTGATGGAAATGTTCAAAAATATCAGTACAAAGTCAGACAAAATGAAGATGGTCAATTAGAAGCGGTTCCAGGTACAATACAAATCCAGCCAGAAGGTACCGAACAATTGATATGCGAGGATACAACGAATAAAGAAATGACAATAAATCAAAATATTGTGGAAGATGAAACTCAAAACTTCCAAAGTATTTATGAAAATTCGTTAACGGAAGGAATGAAATCAGAAAATGTCGATGAAGAAATAATCAATGAAAATGAGCACATCACAGAAGAAATCCAATCGGAAGAAACAATTTACGAAGATACAAATAATGAAATTGAAGTAGCGCAAGAATATAATGCAGAAGACGAGGTTGTCGAAAAATTAGATGAAGAAAATAATCATATTGAATATTTGAAACAAGATGAAGAAGAGGTTTTGCAACATACGGGAGGTGAAACGTACTTTGGTGAGGAAGAAGAAGAATTTGAAAATGTTGAATATCTACAAGATGACGATGACGAAGAAGTACATTATGAACAATTAGAAGAGAATTACATGGAAGAATCTACCGAACATATTCTAACAAATTTGCCTTCTGAAGAAGATCAAACTTTTATAAAACAATATCCACCAAATAGCCAAGTTGAAGTATTATCAAATGTTCTCATGGAACCAAATATAAATGATCCTCTTACTCAAGAGGAACCAACTCCTCCTCCACCCGTGATTTCAAATACCCCTAAACAAATTTTAAATAAATTATCGAATATAACATTTGGTAATGAAAGTATCGAATTAAAACGTGTAAATAGTGGTGCTACTTCGAAACAAGCAAATAAATTAACATTTTTAATCGTAACTCATCCCGAAACCGAAAAACAAAATAAAAATCTGATCAATAACAAAAAATTTCGAAGTATTTTAAGGCCTAGCATACATCAACACAGTAGTTTACAGAAAAATGTTTATCCTCCCGTATATAGAGCTAATTGTAAGCAATTAAAACAAAAAACAGAAGTACCGATTTCAAAAATTAATAATACGGTTTTAAATAGCACGCCAAATTTTAATAAAGGTCCACGGCAGCCTCGAAAACAGGTTATTACACCAGTAGATCGAGTTGGATCTGAGATAATAATTCAAGCTCCTGAGGAAAAAGAGATCCCAGTAGAAACGTACGATTTAGATGCATTTAGTGATGAAGAATATTCACCAAAAGTTAAACCAAAGAAAATATACTCGACAAAGAAACGTGGGAAGAAACCAACAAAATTGATTGAATCAATTATAATTTCAGATAATAATTCAAAATCGACATTTGAGGATGATATAGAAATTAAAAACGAATTTGAAGTCAAAAAGAAAGAAAAACCTGTCGAAATTAAGAAACCGGAAAAACCAAAATTCGATAAAGTATTACCTCGAAAAAGAGGTAGACCTGGTCGGCCAAAATTATCTGAGAAGAATAAATTTAATATGATTGAAAAAGAAGTAATTTCTTCCGGATCAATTAAAGGTGGGCAAAGTGGTAGACCAAAATTTATTCGAACCACACGAAAAATTTCAAATGGAAAACAAAAGAATGATTCCAAAGAAAATGACGAAAAGACAATTCGAATTGAAAAGGAATTGAATGAAGATATTGTTAATGATGAGATTCGGTTAATTACCCCTAAAAGACGTGGTCGACCACCGAAAAAGTATTCACCCGATGATAATATTACTCGAAAACGAAAAAGTTCGAGTGATGATGTAAAAAATGTTGATGTTTCTGATAAATATTTTGGATTCTGTAGTGATAGTGAGCTCGATGATAAAGAAACAATTCACGAAGAACCAGATATCAAAAAACAGAAAACCGCTTTGGAAAATGAGAAAATTGATGATTTAATGAGTGAAATGCAAGATATTCATGGTGTATCTGACGAAGAGGAACAACCAGCTAAAATTGATGAAATGTTAGATGAAAAACCTACAGAAACTGAAACTTTACTCTCAATTTTAGAGACATCACCAAACGAAAAAGAAGATGTACTTACAAGAGCATTAAAAAGTGCGAACATAATTACACCTGAAGAGGTTAAACAAGAAGAAAATACTTTTTTAGAGACAACGGCCATTAAAAAAAGTGATAACTCTAAAGTTAACGAACCAAAAAAAATTTCATTTGAAAAGAGACCAACGAATAATACAACTACAACATACAAATGTGCAAAATGTTCAAAAACTTTCCCAAAATATATGTCATTAAAAACACATTTACAAGAACACACTGTACAAAATAAAAAAGGTAAGTTTAATTGTTCTAAATGTCCACGTGTATTTACATTTGAAAATGCACTCAAATTTCATGAAAAATCTCATCATACTCATAATAATCAAAATTTGAGTGAAAACTTAAATAATACAAAAAATTTGAATTGTACACACTGTACAAAATCATTTAAAACAATGTTACAATTAAAATCACATCAATTACAGCATAAACAATATCAATGTGAAAAATGTTCAGCAAATTTTCAAAATAGGTCCGAATTAATCAATCATTTGCGAAATCATTCGAAAAAAGAAAATGAGGATATAAATGATAAATCGACGAAAGCACGAACATTTCGTCGTAGTACACAAGATAAACGTGAATTCAGTGAAATTTTATCAAAAATAGATACAACTAAACGAAAGACTATTGCTGTGACGTCTGATAAAACATCAAATGATGATAAAACGCCATCTGTTGATGTACATCGTTGTAACGTATGTATGAAAACATTTCGACAACTAGTCCATTTAGTCATGCACCGTGAAGTACATCAGAAACCAACATGTTCAAATTGTGGCCAAATATTCCCGTTCAAACATGTACTTAGTGAACATATGCGTCGGTATTGTTTAAAATCACCTCGAATCAACAACGCGAGTGCAAACTCAACAATTAAAAAAAGACCTTCGTTGCAAAAACGACCATCGCTACAAAATAATGATACAACTTACGATTGCGAAAAATGTAAAAAGACATTTAAAAATAAAATGTTTTATCAGAATCATATGAAAATACATGTGAAAAAGTCACCGAATAAACAACGGAATAATGTGCTCGTTCGGAAAAGCATGATGGGTAAAACAAAAATTTTAGATACTACACTTAGTGCAGCCGCAATTTCAGAACGTCGTAAATCGGATCGAAAACAAGTGCCTACAAAAAAAGTGATGCCAATTCGATGTGAAATGTGTGATTTGAGTTTTACCACATACACAGGCTTGTACAGGCATACACTATCACATCCAGATATCAAAGAAAAATGTGAATATTGTGATGCAGGCTTCGAGACAAAAGCCCAACTTTTAAAACATTTACAAACGCATGTTAAAAGTGATATTCAATTAGAATGCTCTACCTGTAAGAAGACATTTAAAACTGACGATGAACTTATTAAACATAAAAATGAGTGTAGTGAGGTTAATGACGCTCAGGATAAACTAAATAGTGAACAAAGTGAGTCATCATCACAGGGAGACAAGACTCATAATAACGATAGCAATAAAAACCTTTTATTAACTTTGAGGAAATCAGTCAATATTCCTAAGAAGAAATTAGCACATGGTGGAATACCACTCCCGTTAAAATTGCAAAATAAGTTATTGAAAAGAAAGTTATAG
- Protein Sequence
- MAEDENIYYIQKQEDGTHLSCVWQDAYTEVVAYEENVQDNSNLNITYVTEDNESSNENYETAGEDSQYYSVIETNETLDHDQTLQPIEPQMNLNEDFKGNLTVIQYPTEDVSVKDELIETKVENCDNTIVEDDDQVILYKIEDSNELFAVQIARDADGNVQKYQYKVRQNEDGQLEAVPGTIQIQPEGTEQLICEDTTNKEMTINQNIVEDETQNFQSIYENSLTEGMKSENVDEEIINENEHITEEIQSEETIYEDTNNEIEVAQEYNAEDEVVEKLDEENNHIEYLKQDEEEVLQHTGGETYFGEEEEEFENVEYLQDDDDEEVHYEQLEENYMEESTEHILTNLPSEEDQTFIKQYPPNSQVEVLSNVLMEPNINDPLTQEEPTPPPPVISNTPKQILNKLSNITFGNESIELKRVNSGATSKQANKLTFLIVTHPETEKQNKNLINNKKFRSILRPSIHQHSSLQKNVYPPVYRANCKQLKQKTEVPISKINNTVLNSTPNFNKGPRQPRKQVITPVDRVGSEIIIQAPEEKEIPVETYDLDAFSDEEYSPKVKPKKIYSTKKRGKKPTKLIESIIISDNNSKSTFEDDIEIKNEFEVKKKEKPVEIKKPEKPKFDKVLPRKRGRPGRPKLSEKNKFNMIEKEVISSGSIKGGQSGRPKFIRTTRKISNGKQKNDSKENDEKTIRIEKELNEDIVNDEIRLITPKRRGRPPKKYSPDDNITRKRKSSSDDVKNVDVSDKYFGFCSDSELDDKETIHEEPDIKKQKTALENEKIDDLMSEMQDIHGVSDEEEQPAKIDEMLDEKPTETETLLSILETSPNEKEDVLTRALKSANIITPEEVKQEENTFLETTAIKKSDNSKVNEPKKISFEKRPTNNTTTTYKCAKCSKTFPKYMSLKTHLQEHTVQNKKGKFNCSKCPRVFTFENALKFHEKSHHTHNNQNLSENLNNTKNLNCTHCTKSFKTMLQLKSHQLQHKQYQCEKCSANFQNRSELINHLRNHSKKENEDINDKSTKARTFRRSTQDKREFSEILSKIDTTKRKTIAVTSDKTSNDDKTPSVDVHRCNVCMKTFRQLVHLVMHREVHQKPTCSNCGQIFPFKHVLSEHMRRYCLKSPRINNASANSTIKKRPSLQKRPSLQNNDTTYDCEKCKKTFKNKMFYQNHMKIHVKKSPNKQRNNVLVRKSMMGKTKILDTTLSAAAISERRKSDRKQVPTKKVMPIRCEMCDLSFTTYTGLYRHTLSHPDIKEKCEYCDAGFETKAQLLKHLQTHVKSDIQLECSTCKKTFKTDDELIKHKNECSEVNDAQDKLNSEQSESSSQGDKTHNNDSNKNLLLTLRKSVNIPKKKLAHGGIPLPLKLQNKLLKRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -