Ccar021292.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- zfy1
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:127702943-127706585[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0062 0.13 13.1 0.8 1 23 183 206 183 206 0.96 2 10 0.14 3 8.8 5.2 2 23 212 234 211 234 0.95 3 10 0.0025 0.054 14.3 8.0 1 23 239 261 239 261 0.97 4 10 5.7 1.2e+02 3.8 6.3 2 23 267 289 266 289 0.84 5 10 0.0023 0.05 14.5 1.3 3 23 297 316 296 316 0.97 6 10 0.0022 0.047 14.5 0.2 3 23 324 345 323 345 0.90 7 10 0.00014 0.0031 18.3 1.0 1 23 354 376 354 376 0.96 8 10 2.9e-05 0.00062 20.5 0.9 1 20 382 401 382 402 0.95 9 10 0.0041 0.09 13.7 6.0 1 23 411 433 411 433 0.98 10 10 1.5e-05 0.00033 21.3 1.4 1 23 439 461 439 461 0.98
Sequence Information
- Coding Sequence
- ATGGAGGATTTTGATAAAGTTTGTCGTATTTGTATGAAATTGGAAAAAACATTGCTATCAATTACTTCATTTAAAATAATTGATATGATAATAGCGTGTGCTTCTGTACAGATTTGGGAAAACGATGATCTACCAAATCAAATATGTAACGCTTGTTTTCTTCAATTACAAAATACCATTAATTTTAAACAATTATGTGAAAATTCAGACAATACTTTTCGTCAAATTATTAAACAGAGTAAAATTAATTTATCAAATAACCAAATTGATTTTAATAACATAAAAAATGAAGAAATCGAAGATTACACTGATGATACTACTTTCGTGGATATCAAAGAAGAAAGCGAAGACGAAGATATACAGGAAAATATAAAAAATGAAAATAATTTAGGAGACAATGAAGATGATTTAAAAAAATTAGAACCAAATAATATAATAAAAAAAAGAAAAAAATCTAAAGTGAAATTGAATAAAATGAAAATACAAACTAAATCTGAAAATGGTACCAATGAAGATATTAGAAATGATGAAAATGAGGTAGAAACATTTATTTGTCAGAAGTGTGATAAAGAATTTAAAAAAGTATGGGTATTGGGCCAACATATGCAACGTAAACACAGAGCGAAACCCTTAAAATGTAGCGAATGTAAATTAAAATGTTATCATCCATTACATTTAAAGCAGCACCAGGAAGTAGCCCACAATCCATTGAATCACACTTGTAGTACATGTAATAAAGTATTCACAAATATTTATAACTTAAAATACCATAAATGTAAACATTTATCACCGAAACTTCATTGTCGAAGATGTGACAAATCATTCCAAGATAAACGAGAATTAAAATGTCATAATAAGGAAAAACATGCCATGGAAATGTATGTAGCATGTCATATTTGTGGTAAATCAATAACGAAAAAGAGTCTTAACAATCATTTGGCAACTCATGAAGAACGTGATAAACGGACATGCATCGTATGTTCAAAAACATTTATACGTGAGGACACGTTAGCAAGACACATTAAACTAATACACGAGGATAAAATACGTGAACGAAATTTTTTATGCAACATTTGTGGGCATGCGTCACGTTTTGCGGCTGATTTACGTAAACATTTAAGAACTCATTCAACCGAACGACCGTTTGCCTGTAAACATTGTGATAAAACGTATCGGTCTGAAGATAATTTAAAAGAACATATCTCATGCGCCCATTTAGATGAACGAAAGTTTCAGTGTAGGTTTTGTCCACAAGCGTTTAATCATAAGAAAACTTTAGTGCATCATGAACGACGTCATACCGGTGAAAAACCACATAAATGTGAAGTGTGTGGTAAAAGATTTATACAAAAAATAGCATTACAAATTCATTCAAAAACACACATAAACTCAAGCGAGAATTTTATGCGAAACTCAATTTAA
- Protein Sequence
- MEDFDKVCRICMKLEKTLLSITSFKIIDMIIACASVQIWENDDLPNQICNACFLQLQNTINFKQLCENSDNTFRQIIKQSKINLSNNQIDFNNIKNEEIEDYTDDTTFVDIKEESEDEDIQENIKNENNLGDNEDDLKKLEPNNIIKKRKKSKVKLNKMKIQTKSENGTNEDIRNDENEVETFICQKCDKEFKKVWVLGQHMQRKHRAKPLKCSECKLKCYHPLHLKQHQEVAHNPLNHTCSTCNKVFTNIYNLKYHKCKHLSPKLHCRRCDKSFQDKRELKCHNKEKHAMEMYVACHICGKSITKKSLNNHLATHEERDKRTCIVCSKTFIREDTLARHIKLIHEDKIRERNFLCNICGHASRFAADLRKHLRTHSTERPFACKHCDKTYRSEDNLKEHISCAHLDERKFQCRFCPQAFNHKKTLVHHERRHTGEKPHKCEVCGKRFIQKIALQIHSKTHINSSENFMRNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -