Ccar008124.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- zfy1
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:70805639-70808255[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.0027 18.4 0.6 1 23 205 228 205 228 0.98 2 11 0.86 19 6.4 4.7 2 23 234 255 233 255 0.97 3 11 0.047 1 10.3 1.3 2 23 257 279 257 279 0.96 4 11 1.3e-05 0.00027 21.6 2.2 2 23 287 309 286 309 0.97 5 11 0.0034 0.074 13.9 0.6 3 23 330 349 329 349 0.96 6 11 0.0027 0.059 14.2 3.3 3 23 364 383 362 383 0.97 7 11 0.0011 0.024 15.5 0.1 2 23 390 412 389 412 0.94 8 11 0.21 4.6 8.3 5.3 3 23 417 436 415 436 0.97 9 11 0.0022 0.048 14.5 3.2 1 23 442 465 442 465 0.95 10 11 0.035 0.75 10.8 0.9 1 23 471 493 471 493 0.98 11 11 7.1e-06 0.00015 22.4 2.1 1 23 499 521 499 521 0.99
Sequence Information
- Coding Sequence
- ATGGACATAAAATGTGTTTTAGTGTCTGATTTTGAGAAAGTTTGTCGTATTTGTATGAAATTCGTCAAAACATTTTTACAAATTAACTCGTTTAAAATAATTGATATGATAACAGCATTCGCTTCTGTACAGATTTGGGAAAATGATGGACTACCAAATCAAATATGCAACGAATGTTTTCTTCAACTACAAAACACCATTAGTTTTAAACAATTATGTGAAAATTCAGATAATACTTTTCGTCAAATTATTGAACAGGATAAAAGTAATTTTTGGAACAACCAAAATGACTTGGAAAATGTGAAAAATGAAGAATTTTCTACTCTAAATTATCCAATTTACATTAAAGAAGAGACAGATGTTGAAACTATTGCAAATCAAGACAAGGATGATTCCAACAAAACACAAAACAACCTTGAAGAAACGGTGGAAATTAAAAAAGAAGATAAATCAGAATCGAATAGAAAAAGTACAAAGAAGAAAACCATCCTACATAAGTTCGAAGAAGAAAGTGATGGATTTGAAAATACAAATGATGAAAATTATTCTAGTTATGACAGTGAGAATGAAAAGTTATCCGATTTAAAACTACAACTACCGAAGATAAGTGAATACGAATGTGAAACATGTTCTAAGACATTTAAAAAAGTCGATGCTCTTGGTTGGCATATGAAAAGAACGCATAAAGCAAAAGGTGTTAAATGTGGACGATGCTCAGTAGTTTGTTATCATTCGTTACATTTACGTGCCCATGTAAAGTCACATAATAGATGTGCCATTTGCTATTCTTCATTTTCAACCCGAAAAAAATTAGTAGAACATAAATTAACACAACATAAAATAAATGAAAAATCTATTAAATGTGATACTTGTAAAGAAACATTTCAAACAAAGCGTGATTTACAAAAACATATGCGTAAAATCCATCCAAAAAGGATGCTCTCAAAAGACAAGGCAAGAATTAAGTACGATAAACAGGACGCTAATTGTGAGATTTGTGGTAAATCAGTACGTCGACGTAATCTAAGACTGCATTTGGGTACACACAGTGAACACGCCGAGAATCTAAAAGTTAAACTGAACGTAAATTGTGAGGTTTGTGGTAAATCTATACGACGACATCATCTACGCTCGCATATGTTAACACACAGAGAACTTAATAACCTAACTTGTCGATATTGTGCAAAAGAATTTACAACACCAGAAGCACTTCAGGATCATGAGCAAGTTTCTCACAAGAAATGTTTATGTGATCATTGTGGACTTAGGTTGCGTTCTAATCAACTAAAAAAACATTTATTAACCCACACCAAGGAACGGCCACATGCTTGTGATCGATGCGATAAAACTTATCGCCACGGTTATGAATTAAAAACGCACATATCACGTGTTCATTTGAATGAACGTAATTTTGTTTGTACATTCTGTTCCCAAGCATTCTTTGATAAGGTTATCCTATTAAAACATGTAAGACGACATACTGGTGAAAAGCCATTTAAATGTCAAATGTGTGAAAAATGTTTTATACAAAAAGCTGCTTTAGATGTGCATATGAAAACTCATACGAATTTGTTATAA
- Protein Sequence
- MDIKCVLVSDFEKVCRICMKFVKTFLQINSFKIIDMITAFASVQIWENDGLPNQICNECFLQLQNTISFKQLCENSDNTFRQIIEQDKSNFWNNQNDLENVKNEEFSTLNYPIYIKEETDVETIANQDKDDSNKTQNNLEETVEIKKEDKSESNRKSTKKKTILHKFEEESDGFENTNDENYSSYDSENEKLSDLKLQLPKISEYECETCSKTFKKVDALGWHMKRTHKAKGVKCGRCSVVCYHSLHLRAHVKSHNRCAICYSSFSTRKKLVEHKLTQHKINEKSIKCDTCKETFQTKRDLQKHMRKIHPKRMLSKDKARIKYDKQDANCEICGKSVRRRNLRLHLGTHSEHAENLKVKLNVNCEVCGKSIRRHHLRSHMLTHRELNNLTCRYCAKEFTTPEALQDHEQVSHKKCLCDHCGLRLRSNQLKKHLLTHTKERPHACDRCDKTYRHGYELKTHISRVHLNERNFVCTFCSQAFFDKVILLKHVRRHTGEKPFKCQMCEKCFIQKAALDVHMKTHTNLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -