Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:23110043-23112982[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.041 0.89 10.5 1.5 2 21 194 213 193 214 0.93

2 14 9.1 2e+02 3.1 0.3 3 23 222 243 220 243 0.89

3 14 0.015 0.31 11.9 2.7 1 23 255 277 255 277 0.97

4 14 0.014 0.29 12.0 2.7 2 23 296 317 295 317 0.94

5 14 2.7 58 4.8 0.4 1 23 324 346 324 346 0.96

6 14 0.003 0.066 14.1 0.2 2 23 352 373 351 373 0.95

7 14 0.0095 0.2 12.5 0.1 1 23 381 403 381 403 0.98

8 14 0.055 1.2 10.1 2.5 1 23 408 430 408 430 0.96

9 14 0.0068 0.15 13.0 0.1 3 23 436 456 435 456 0.98

10 14 0.0067 0.14 13.0 2.9 1 23 462 484 462 484 0.97

11 14 0.0005 0.011 16.6 6.4 1 23 490 512 490 512 0.99

12 14 0.05 1.1 10.3 4.1 1 23 518 542 518 542 0.97

13 14 5.4e-05 0.0012 19.6 1.1 1 23 549 571 549 571 0.97

14 14 0.0035 0.075 13.9 9.9 1 23 577 600 577 601 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.041	0.89	10.5	1.5	2	21	194	213	193	214	0.93
2	14	9.1	2e+02	3.1	0.3	3	23	222	243	220	243	0.89
3	14	0.015	0.31	11.9	2.7	1	23	255	277	255	277	0.97
4	14	0.014	0.29	12.0	2.7	2	23	296	317	295	317	0.94
5	14	2.7	58	4.8	0.4	1	23	324	346	324	346	0.96
6	14	0.003	0.066	14.1	0.2	2	23	352	373	351	373	0.95
7	14	0.0095	0.2	12.5	0.1	1	23	381	403	381	403	0.98
8	14	0.055	1.2	10.1	2.5	1	23	408	430	408	430	0.96
9	14	0.0068	0.15	13.0	0.1	3	23	436	456	435	456	0.98
10	14	0.0067	0.14	13.0	2.9	1	23	462	484	462	484	0.97
11	14	0.0005	0.011	16.6	6.4	1	23	490	512	490	512	0.99
12	14	0.05	1.1	10.3	4.1	1	23	518	542	518	542	0.97
13	14	5.4e-05	0.0012	19.6	1.1	1	23	549	571	549	571	0.97
14	14	0.0035	0.075	13.9	9.9	1	23	577	600	577	601	0.93

Sequence Information

Coding Sequence: ATGGAATTTGGATTTGATTCAGTGAATGATTTACAAAAGTTATGCCGATTGTGTATGGAATCGGGATCAGAATTATTTTCAATATATGATTTAACTCCTTTAAATGAAATTGGAGTACATATACAATTTGTAGAAATGATAATGGGATGTACTTCGCTTAAAATAAAATCTGGTGACGGATTACCAGAAGCTATTTGTATGCAATGTGTCAATTATTTAGGGACTTCATATAATTTTAAACAACGATGTGAGAAAACTGATCGTAAACTTAGAGATTTAATCAATTTACTCAAAGATAACAAGAAAAGTGATATCTCAGAGCAAGAAGATTTTAATGATTCTTTATCCTTAGACCATTTTGATATTGACATTAAGGAAGAGATAAATGGGATACAAGATGGTAAACTTGAAGTTATCGATTTAGAAAATAATACAATTAATTCAAAAGTCGAAAAAGATAGAAACAGTTTATCAAAAATTACAAATTCAAAAGAAAAACAAACGGATGATAAAAAAAGTAGTTTGAGGAAAAAAGGAATTACAAAAAAAGAAAAAATTGGAAGGGAAAATAGAAATTTATCATGTTCATTTTGTTTTAAGCAATTCAGAACTGAAAACAAATTAAAATCACACACGAACATATGCCAAAATCGACCTATGCATTGTGGACTTTGTTCTGAGGACTTTTCAGATATAACCATCTTAAAGCAACATCTAGCTCAAATACATTCAATAGAAACAGATATTAACGAAGATCAAATTTACACGTGTGATATATGTGACTCTGTATTTACAGATCACAGTAAACTATTATTCCATTATAGAAATCATATCGGAGTAGCTGCATACTATCCGGACGAAGTCAACTCAGGCGATAAAGTATTGACATGCAGTCATTGTAATACAACTTTTACGAAAATATTCGATTTAGAGACTCATTTTAATGGTCATAAGTCAGATAAATCAACATTTATTTGTAGAATATGTTCGTATGAGACAATTGAAGAACAATCAGTCAAAACACATTTAAAAAATCATGGAATTGGTCCCCTTATTTGTAATATATGTTGGTTAAGTTTTATTTCTAATCGTAAACTTCGATTACATGTAAAGGCACATAAGCAAGTAAATCGATTAGAATATACGTGTTTACTTTGTGAAAAAATGTTACCAACACGTGCTGAGATGAAAAATCACATAGCAGTCCACATAGAAGATCTACATTCGTGTTCAAGCTGTTCAAAATCATTCCAAAACGTAACTGAATACGAATCCCATCAAATGGAACATGCAAAATCAGTTTTATGTACAATCTGTGGGAAACTCTTCCCGGGAAAATCAGTTTTAGATTCCCATATGCTTATACATGACGGTTTAAAACCTTTCTCTTGCTCAATATGCAAACAAAGTTTTCGTACAAAACATATTTTGAAAGGTCATGAACGTGTTCACAGCGACGCTAAACCATATGTTTGTACTTGGTGTGGATACTGTTGTAAACGCTCTGGTGATCTTTATATTCATCATCGTACTCATACTGGCGATCGCCCGTATAGTTGTTCATTTCCTGGCTGTAATAGTACATTTAAAACATCCAGTTTTATGCATCAACATTTAAAACGACATACGGGGGAAGCAAAGATGCACACATGTGAAGTATGTTCGAAATTATTTTCTAGCTCAATTGCCTTAAAACGGCATATGTTAATTCACAATAATGAGCGACCTCACGCATGTGATGTTTGTGGAAAATGTTTTAGAAGAAAGCATCATTTGAAGGGACACAAAGCTAAAATACATCATTTATAA
Protein Sequence: MEFGFDSVNDLQKLCRLCMESGSELFSIYDLTPLNEIGVHIQFVEMIMGCTSLKIKSGDGLPEAICMQCVNYLGTSYNFKQRCEKTDRKLRDLINLLKDNKKSDISEQEDFNDSLSLDHFDIDIKEEINGIQDGKLEVIDLENNTINSKVEKDRNSLSKITNSKEKQTDDKKSSLRKKGITKKEKIGRENRNLSCSFCFKQFRTENKLKSHTNICQNRPMHCGLCSEDFSDITILKQHLAQIHSIETDINEDQIYTCDICDSVFTDHSKLLFHYRNHIGVAAYYPDEVNSGDKVLTCSHCNTTFTKIFDLETHFNGHKSDKSTFICRICSYETIEEQSVKTHLKNHGIGPLICNICWLSFISNRKLRLHVKAHKQVNRLEYTCLLCEKMLPTRAEMKNHIAVHIEDLHSCSSCSKSFQNVTEYESHQMEHAKSVLCTICGKLFPGKSVLDSHMLIHDGLKPFSCSICKQSFRTKHILKGHERVHSDAKPYVCTWCGYCCKRSGDLYIHHRTHTGDRPYSCSFPGCNSTFKTSSFMHQHLKRHTGEAKMHTCEVCSKLFSSSIALKRHMLIHNNERPHACDVCGKCFRRKHHLKGHKAKIHHL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -