Ccar023003.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- Zfpm1
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:131685592-131693914[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.027 0.59 11.1 0.1 2 23 5 26 4 26 0.97 2 15 4.1 89 4.2 3.5 1 23 796 819 796 819 0.90 3 15 6.7 1.4e+02 3.6 0.4 3 23 872 893 870 893 0.93 4 15 1 22 6.1 4.8 1 23 901 923 901 923 0.98 5 15 0.00069 0.015 16.1 1.4 2 23 926 948 925 948 0.96 6 15 0.13 2.9 8.9 1.1 1 23 960 983 960 983 0.97 7 15 0.006 0.13 13.2 2.2 1 23 991 1014 991 1014 0.97 8 15 0.72 16 6.6 1.9 5 23 1026 1044 1024 1044 0.94 9 15 0.0015 0.032 15.1 1.0 3 23 1051 1072 1050 1072 0.97 10 15 0.025 0.55 11.2 0.1 2 23 1088 1108 1087 1108 0.96 11 15 8.2e-05 0.0018 19.0 2.9 1 20 1114 1133 1114 1136 0.92 12 15 0.0011 0.023 15.5 1.1 1 23 1144 1166 1144 1166 0.99 13 15 0.0021 0.045 14.6 6.8 1 23 1172 1194 1172 1194 0.98 14 15 0.00037 0.008 17.0 5.8 1 23 1200 1222 1200 1222 0.98 15 15 0.00073 0.016 16.0 8.1 1 23 1228 1250 1228 1251 0.96
Sequence Information
- Coding Sequence
- ATGAATACGGTAGTGTGTCCCGTGTGTACGTTATATTTACGTAATAATATAACATTAGAGGAACATTTACGTACACATCCGAAAGCAAAAGTGATTGAAGCATTAATTTCGGCAACAACAAGTAAAAATGTTACGAGTCAACCCGCAATCACAATTCCACCATGGCAACAAACGACTACACTCCAAACGAACAATTCGATATTGGTACCAGTTCAAGCCAATAATTCATCAATTATTTATCAACAGTTTATGAGTAGTAACACCACTCATATGGCACCCACAATGAACGTTCCACAATATATAACAATACCAACAAATGGGGGATTTAATCAACAGCCGTTGATTATGAATCAACATCCATATTTATATCAACATCAACAACAGCAATTACAATTTATGGCGGCTCCTATGGTACCCGTTGGATTCAATTATCCCCCGGATCCATTAGAGATCAATCCAACTGTTGAAACAGTTCCATCGCAATCGACATCGGTTATTAATCTTGTTGATCGACAACCTGTTATATCAACTCATCAAAAATCAACGGAATCAATTAAAATTCCGAGTACTTCGGAGACTTCGAATGGTGAATCAACAATAACGCAACCGGTAAGCAATAAATCAAATTCAGAATCTAATCAATCATTTATATCCGAACCTGTAATCAGTAAACCATCGATTACTGAACCTGTAATCATTAAATCAACAAGCCAATCGATTATAACTCAACCTGTAATCAATAAATCAATAATTAGTGAACCAACAATCAGTGAATCGATTATAACTCAAACTTTAATCAATAAATCAACGACATCTCAATCTACAATCAATAAATCAACATGTGAATCGATTATAACTCAATCGATTAATCAACCAATAATATCTGAACCTGTAATCAATAAAATAGCAGAATTTGTAATGAGTAAATCATCAAATCAATCGATTATAACTCAACCAATCAATAAACCAATAATATCAGAATCTGTAATCAATAAATCATCAATATCTGAGCCAGTAACAAGTCAATCGATTATAACTCAACCATTAATCAATAAATCAACAAGTTCTGAAACTATATGTCCTAAATCATCAAATCCATCGATTATCACGCATGCTGTACTCTTTAAATCGATAACACCTCAATCGAAATCTATTGAAACATCATCATCGTCTTGTTCGAGTCAAATTGATCGTTCAACAGTGGTTTGTGCGCCAAGAAAATCACAAACATCGCCTGTATCGGTATCGACAATCCAATTAGCGGATATTACAATTAGTACCGAAGTGATACCAAAAGATTCACAAAAACCAGCAACTGAATATGTGAATACAACGAATCAAATGGAAATTATACCAATTTATAATAAGAAAAATAATTTAGATCAACAAATTGATTCGAATGAAATGTTGTTGGATACAAGTGAAATAAAAATTGATGAGACTGAAACGAAAGTGAATAAAAAAACGGTTATTGAAGTTTATTCGAATGACAATACACAGCAACAATGTGAAAAAATGGATATTGAAACGTTTCATGAAAAGATGGCGGATGACGATGAAGAAGACGATGCAGATGCAGATGAAACAACGCACAATGAAAGCAATTATATCTTACCAGATGTATCGTTTTATCAGATCCCAAAGTTTGAGGATATGACCATAGAGAATAAAGAACCGCCAAGGAATTCTCAAGAAACTAAGAACGATATCGTAATTATTAAAAATGAAGTAATTTCCTTGCCACCAAACAAACTCGCATCAGTTTATCTACCTTCGTTGCCCGATCACGATGATGATACCTCATTCAAAGTGGAACAACTTAAGGTAGACCTAGAGCATGATGCCTACGGAGAAATTGTAGAATTTGGTGATATTAAATTAATGTTAAATAATGATATGATAAATCATGGAGGAGCTACCACAGCGGTTGTTAATGATTTACATTGTATGGAAGATATTTATGACGATGATAAATCGTCACCGGTTTTATTGAATATCGGGGAAATGGTTACCAATAAACAGGAATATAATGAAAGCCATGAGTACCGTGAAAATGAAGAATATCATGAAAATCAAGATTATCATGATAGCCATGAACATTATGATAGGGATAGTTTAAATATACGTGCAGATGAATGTATGCCACCAAAAGGTGAATTATCCGAACAAGAGAGTAATGGAGCTGGAGATGAAGAGGTTTGGGGAAAGATGTTTCAAGAAGGCAGTTCTGGTATATCAACATCATATGATCTGATTGCTCGTGAAAGTTGGGAAGCGTCTGATTCATCTGATTCCGAATTAACACCACCCTTACAAAGTCGCATCTCACCAAACGATCCAAGCGAAACCAAAAGTCAACAATCAGATCCAAATAAAAGAATTGTATATAAATGTAGTTATTGTAAAGAAATATTTAACTGTCCGAAGGAGCGTCGTGTCCATCAAACGAACATGCACGATCATAAAGATAAAATAACGGAAAAGGATGAAGATGATGATGACGATGTACAAATTGTTGAAGACGAAGAAGAAGAAGAGGAAGACATGAAAAATATTAAACTCGAAGATGAAGAAGGTAAATTTAACGCACAAATGGACCCAAAACATACACATTGTGAAATATGTAACATTGAATTCGAAGCAATTGAACGTTACAACGAACATTATCGTAGCGAACATCCAAACATTCCGATACCCCGTTACAAATGTAGCTCATGTCAATTAACCTTTACGCTTGAATGTAAGTTCTCACAACATTTAAAAATCCATCCTCTAGTTTGTCAAATCTGTTATAAATTATTCTTCAAACAATCAACTTTACAAAGACATCTTCGACGGATTCATTTAACGAAACGGAAAACACCACCGAATAAGAAATATTCATGTGAAGTATGTTTTGAAAAATTCGCAACTTACGCGAAAAAGAACAGCCATATCAATTCAAAGCATGCGGATGTTGCGGCAACGATGTTTAAGTGTTCAATTTGTAATGAGACATTTCGTAAGCGTAAAATTCTTAAACAGCATCGAGATACTGTACATATGTTACGAAAACCTCAACGAGATTTTGTTTGTCATTGTGGTGAGACATTTAAATCAAAAAATCGTTTTACTTGGCATAGTGAAATACACGAATCCAAACCGAAAGCATGTACTTTTTGTAGTGAGAAATTTGTACATACAGCAAGTTTAACACGTCATATACGGATCGCACACAATGAAAATTACATCCCTGACGATAATCGATTAAGTGAAAACGTACCCTGCCCAATTTGCAAGAAAATGTATTTAAAATCATCGTTGGACGTTCATATTAAAATACACACGGGTGTTAAGCCGTTCTCGTGTCACATCTGTAACAAAGTTTTCACAACGAAATGGAATCTAAAACTACATAAATGGACGCATGCCGCACGACTATCGAAACCGTATAAGTGTAATCAATGTCAAAGTGCGTTTATTCGACAGAATGATTACGTATCGCATATGAACTCACATCGGAATATCAAACCGTATACGTGCAATCATTGTGGACGTCAATTTATACGGAAATATAATTGTCAGCGACATGTGCGGGAACACGAGAGAGATAAGTCACATAAATGTACTGTATGTAATAAAGAGTTTCATCGATCGTATTATTTACGGGAACATTTACGGGTGCATAGTGGTGATCGACCGTTTTCATGTCACATATGTGGGAAAACTTCCACAACGAAATCGAATCATAATAAACATATGCGTATACATCATGCACGAGATCCTGTTAGCACCGAAAATTAG
- Protein Sequence
- MNTVVCPVCTLYLRNNITLEEHLRTHPKAKVIEALISATTSKNVTSQPAITIPPWQQTTTLQTNNSILVPVQANNSSIIYQQFMSSNTTHMAPTMNVPQYITIPTNGGFNQQPLIMNQHPYLYQHQQQQLQFMAAPMVPVGFNYPPDPLEINPTVETVPSQSTSVINLVDRQPVISTHQKSTESIKIPSTSETSNGESTITQPVSNKSNSESNQSFISEPVISKPSITEPVIIKSTSQSIITQPVINKSIISEPTISESIITQTLINKSTTSQSTINKSTCESIITQSINQPIISEPVINKIAEFVMSKSSNQSIITQPINKPIISESVINKSSISEPVTSQSIITQPLINKSTSSETICPKSSNPSIITHAVLFKSITPQSKSIETSSSSCSSQIDRSTVVCAPRKSQTSPVSVSTIQLADITISTEVIPKDSQKPATEYVNTTNQMEIIPIYNKKNNLDQQIDSNEMLLDTSEIKIDETETKVNKKTVIEVYSNDNTQQQCEKMDIETFHEKMADDDEEDDADADETTHNESNYILPDVSFYQIPKFEDMTIENKEPPRNSQETKNDIVIIKNEVISLPPNKLASVYLPSLPDHDDDTSFKVEQLKVDLEHDAYGEIVEFGDIKLMLNNDMINHGGATTAVVNDLHCMEDIYDDDKSSPVLLNIGEMVTNKQEYNESHEYRENEEYHENQDYHDSHEHYDRDSLNIRADECMPPKGELSEQESNGAGDEEVWGKMFQEGSSGISTSYDLIARESWEASDSSDSELTPPLQSRISPNDPSETKSQQSDPNKRIVYKCSYCKEIFNCPKERRVHQTNMHDHKDKITEKDEDDDDDVQIVEDEEEEEEDMKNIKLEDEEGKFNAQMDPKHTHCEICNIEFEAIERYNEHYRSEHPNIPIPRYKCSSCQLTFTLECKFSQHLKIHPLVCQICYKLFFKQSTLQRHLRRIHLTKRKTPPNKKYSCEVCFEKFATYAKKNSHINSKHADVAATMFKCSICNETFRKRKILKQHRDTVHMLRKPQRDFVCHCGETFKSKNRFTWHSEIHESKPKACTFCSEKFVHTASLTRHIRIAHNENYIPDDNRLSENVPCPICKKMYLKSSLDVHIKIHTGVKPFSCHICNKVFTTKWNLKLHKWTHAARLSKPYKCNQCQSAFIRQNDYVSHMNSHRNIKPYTCNHCGRQFIRKYNCQRHVREHERDKSHKCTVCNKEFHRSYYLREHLRVHSGDRPFSCHICGKTSTTKSNHNKHMRIHHARDPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -