Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:3070586-3073651[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.8 1.2e+02 3.8 0.1 2 23 239 261 238 261 0.92

2 10 0.0025 0.054 14.3 2.2 1 23 266 288 266 288 0.96

3 10 0.033 0.71 10.8 1.0 2 23 291 313 291 313 0.97

4 10 0.052 1.1 10.2 2.5 1 23 319 341 319 341 0.98

5 10 0.0056 0.12 13.3 0.1 1 23 347 369 347 369 0.92

6 10 0.00065 0.014 16.2 1.6 1 23 375 397 375 397 0.97

7 10 0.00056 0.012 16.4 3.7 1 23 403 425 403 425 0.99

8 10 1.2e-06 2.5e-05 24.8 0.3 1 23 431 453 431 453 0.97

9 10 1e-05 0.00022 21.9 4.7 1 23 459 481 459 481 0.98

10 10 6.7e-05 0.0015 19.3 4.9 1 23 487 509 487 510 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.8	1.2e+02	3.8	0.1	2	23	239	261	238	261	0.92
2	10	0.0025	0.054	14.3	2.2	1	23	266	288	266	288	0.96
3	10	0.033	0.71	10.8	1.0	2	23	291	313	291	313	0.97
4	10	0.052	1.1	10.2	2.5	1	23	319	341	319	341	0.98
5	10	0.0056	0.12	13.3	0.1	1	23	347	369	347	369	0.92
6	10	0.00065	0.014	16.2	1.6	1	23	375	397	375	397	0.97
7	10	0.00056	0.012	16.4	3.7	1	23	403	425	403	425	0.99
8	10	1.2e-06	2.5e-05	24.8	0.3	1	23	431	453	431	453	0.97
9	10	1e-05	0.00022	21.9	4.7	1	23	459	481	459	481	0.98
10	10	6.7e-05	0.0015	19.3	4.9	1	23	487	509	487	510	0.95

Sequence Information

Coding Sequence: ATGGATTACATAGATTTTACAATACATTGTCGAATTTGTTTGGTAAAAAAAGAACAAATGATTTCAATTTATAATAAATCTGAACAAAAAATATCAGATAATCAGCAAATAATTAAAATATCATATAAAGATATGCTTGAGGAGTGTGCTTCAATACATATATCAACCGAAAACGGTCTTCCAAAACATATTTGTTTTTATTGTTCGAAATTGTTACAACAACTTTATAAATTACGAATTCAGTGTGTTATCTCAGATCGAATATTAAAAAAATGTTTATTAAAATCAAATGATAATTCATCAATTATGGTTGAAAATGATTCAACCGATGGTTTTGATTATCAACTTGCGGATATTAAATCAGTTTCTTCAAATAGTGATATTGAAGAAATTATGATTGAAGAACATTTAGATAATATGTCTGGTGAACAAATTATTACTAAAACTAAAATGTCTTCCGATATAGATCAAACTGAATTAAATCAAATTAAAATGTCTTCTAATATAGATCAAACTAGAATGTCTACTGACTCAAATCAGAATGACGTACATCAAACTAAAATGTCTTCCGACGTAAATAGAACTAAAATGTCTTCTGACGTAAATAGAACTAAAATGGCGTCTAACTTAAATGAAACTAAAATGTCCTCCGACGTAAATGGAACTAAAATGGCGTCTAACTTAAATGAAACTAAAATATTAAATAAAGAACTAAAATGTAGTTTATGTGAAATAATAATTGATAAAGAAGAAGAATTTATTAAACATACAAATGAAATTCATTTAAAAGAATTACATAAATGTAATTTATGTAATAAATATTATATAAATTTAAGTGCATTACAATTACATTTATATAATCATGAGAATCGTTGTAAATATTGTATGAAAACATTTGAAAATATTACACGATTAAATGATCATATACAAATGGATCATGAACAGAAATCTGAATATCCATGTTCAATTTGTGGAATTTTATGTAAAACAAAAACTATACTTAAAAGTCATAAACGAAAACATGCGCAACCAGAAGAATATTTATGTCCGTATTGTGGTAAAGTACTTAAAGATGCAGCTTTTATGAAAGAACATTTGGGATTACATACAGGAGAAAAACGATTTAACTGTAAATATTGTGATTTAAAATTTGTATTTCGAACAGCATTGTACAGTCATATGGTGACGCATACTAAAATAAGCAAGTATAAATGTAAAATATGTTTGAAAAGCTTTTGTCGAGCACAAATTTTACGTCGTCATCTACTCACACACGCAAATGAAAAGAAATATGATTGCAAAATTTGTGGTTGGCGATTTAGAGATCCATCTGATATGCGAAGACATACACAAATACATTCAGGTTTAAAAGCACATACTTGTGAATTTTGTAAAAGATCATTTATACGAAAATATCAATTGACTGTGCATTTACGTACGCACATGGGAATCAAACCATTTGCTTGTACAGAATGTGACAAGAAATTTAGTCAAAAGCATGTATTACTTAGTCATATGAACAGGCATCATGATAAAACATAA
Protein Sequence: MDYIDFTIHCRICLVKKEQMISIYNKSEQKISDNQQIIKISYKDMLEECASIHISTENGLPKHICFYCSKLLQQLYKLRIQCVISDRILKKCLLKSNDNSSIMVENDSTDGFDYQLADIKSVSSNSDIEEIMIEEHLDNMSGEQIITKTKMSSDIDQTELNQIKMSSNIDQTRMSTDSNQNDVHQTKMSSDVNRTKMSSDVNRTKMASNLNETKMSSDVNGTKMASNLNETKILNKELKCSLCEIIIDKEEEFIKHTNEIHLKELHKCNLCNKYYINLSALQLHLYNHENRCKYCMKTFENITRLNDHIQMDHEQKSEYPCSICGILCKTKTILKSHKRKHAQPEEYLCPYCGKVLKDAAFMKEHLGLHTGEKRFNCKYCDLKFVFRTALYSHMVTHTKISKYKCKICLKSFCRAQILRRHLLTHANEKKYDCKICGWRFRDPSDMRRHTQIHSGLKAHTCEFCKRSFIRKYQLTVHLRTHMGIKPFACTECDKKFSQKHVLLSHMNRHHDKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -