Ccar021155.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- znf711_1
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:127618267-127621378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.09 1.9 9.5 1.1 1 23 193 216 193 216 0.88 2 10 0.03 0.66 10.9 3.8 2 23 222 244 221 244 0.93 3 10 0.0015 0.031 15.1 0.3 2 23 250 271 249 271 0.96 4 10 7.6e-06 0.00016 22.3 0.4 2 23 278 300 277 300 0.96 5 10 0.001 0.022 15.6 2.6 2 23 308 328 307 328 0.96 6 10 0.036 0.77 10.7 3.3 2 23 335 357 334 357 0.95 7 10 0.035 0.75 10.8 3.0 3 23 368 388 362 388 0.96 8 10 5.4e-06 0.00012 22.7 2.8 1 23 394 417 394 417 0.95 9 10 0.00062 0.013 16.3 2.7 1 23 423 445 423 445 0.99 10 10 6.6e-06 0.00014 22.5 0.6 1 23 451 473 451 473 0.98
Sequence Information
- Coding Sequence
- ATGGATATGTGCCCAATAGATGATTTCGATAAAGTTTGTCGTATTTGTATGAAATTCGATAAAACATTTCTATCAATAGCTTCATTTAAAATAATTGATATGATAATAGCATGTACTTCTGTACAGATTTGGGAAAATGATAGTCTACCAAATCAAATATGTCAAGCTTGTTTTCTTCAATTGCAAAATACTATCAATTTCAAACAATTATGTGAAAATTCAGATAGTACTTTTCGTCAAATTATCCAGCAAAGTAAAATTAATTTATCGGATAATCAAAATCATTTTGTTAACGTGAAAGATGAAGAATTCGAAGATTACGCTGATGATAATTCTCCATTAGATATCAAAGAAGAAGAAGACATTCCTGAAAATGCCACAAATGAAAATGCCTTGGAAAATGAAAAAATTAGAATCGATGAAAATGAAGATGCTTCTAAAAATTCAGAAACAAACATGTTGGAAAGTAAAAAGAAAGGCAGATTGAAATTGAACAAAATACAAATACGAACTAAATCGGAAGATGGAAGTAGTAGCCATGAAGATATTAAAGATGACGAAAAAATGGAAGAAACGTTTACTTGCGAGCAATGTAATAAAGAATTTAAAAAAATATGGGTATTGGGCTTACATATGCATGGTAAGCACAGAGCGAAAGCATTAAACTGTAGCGAATGTAAATTAAAATTTTACCATCCATTACATTTAAAACAACATCAGGAATTAACGCACAATCCATTGAATCTAACTTGTAAATTATGTAACAAAGTATTGTCTGATATTTATTCATTAAAAGCTCATAAATTAATCCATTCAAATCAAAAACTTGTATCTTGTGATCGATGTGACGAATCATTCCGAACGAAACCAGAACTGAAGAACCATATTAGGAAAGCACATACACGAATCGAAAAGAATATAACATGTCATGTTTGTGGAAAATCAGTACGGAAAAAACATCTATCCGTTCATATGTCAATCCATAAAGAACGTGAAAAGGTTACATGCAACATCTGTTCAAAACAATTCTTGCAACAGTCAACGTTAGATCATCATATCAAACATGTACATGAGAATCAAATACATAAACGGAATCATTTATGTAATATCTGTGGACATGCAATGCGTACACCAAAAGAATTACGTATACATTTATTAATTCATACAAACGAGCGACCGTACAAGTGTGATCGTTGCGATAAAACGTATCGACGACAAGATAATTTACGGGATCATATCTCACATGTACATTTAAATGAACGTAAATTTCAATGTACATTTTGTTCACAAGCATTTTTCGATAAAAAGACTTTATTGAATCATGTACGACGTCATACGGGGGAAAAACCACATAAATGTGGTGTATGTGGTAAAGCGTTTATACAAAAAGCTGCTTTGAGAGTTCATTCGAAAACACATACAAACGCAAGGGATAGTGTTCTGCAAGAAAGTATCTTAAGTTTAGTTTAG
- Protein Sequence
- MDMCPIDDFDKVCRICMKFDKTFLSIASFKIIDMIIACTSVQIWENDSLPNQICQACFLQLQNTINFKQLCENSDSTFRQIIQQSKINLSDNQNHFVNVKDEEFEDYADDNSPLDIKEEEDIPENATNENALENEKIRIDENEDASKNSETNMLESKKKGRLKLNKIQIRTKSEDGSSSHEDIKDDEKMEETFTCEQCNKEFKKIWVLGLHMHGKHRAKALNCSECKLKFYHPLHLKQHQELTHNPLNLTCKLCNKVLSDIYSLKAHKLIHSNQKLVSCDRCDESFRTKPELKNHIRKAHTRIEKNITCHVCGKSVRKKHLSVHMSIHKEREKVTCNICSKQFLQQSTLDHHIKHVHENQIHKRNHLCNICGHAMRTPKELRIHLLIHTNERPYKCDRCDKTYRRQDNLRDHISHVHLNERKFQCTFCSQAFFDKKTLLNHVRRHTGEKPHKCGVCGKAFIQKAALRVHSKTHTNARDSVLQESILSLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -