Ccar020314.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:51499212-51503384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.7 58 4.8 1.3 1 21 115 135 115 138 0.94 2 13 8.5 1.8e+02 3.2 6.1 2 23 144 165 143 165 0.96 3 13 4.4e-05 0.00094 19.9 0.8 1 23 171 193 171 193 0.97 4 13 0.0058 0.13 13.2 0.9 1 23 214 237 214 237 0.96 5 13 0.28 6 7.9 0.2 1 10 269 278 269 286 0.84 6 13 0.14 2.9 8.9 1.1 1 23 389 412 389 412 0.97 7 13 0.00018 0.0039 17.9 1.1 1 23 444 466 444 466 0.97 8 13 0.0021 0.045 14.6 1.1 2 23 473 495 472 495 0.97 9 13 2.2e-05 0.00049 20.8 3.9 1 23 528 551 528 552 0.96 10 13 1.8e-05 0.00039 21.1 1.2 3 23 561 581 559 581 0.96 11 13 0.0036 0.077 13.9 2.3 1 23 587 610 587 610 0.93 12 13 1.9e-05 0.00041 21.0 0.9 1 23 616 638 616 638 0.98 13 13 2e-05 0.00043 21.0 1.9 1 23 644 667 644 667 0.96
Sequence Information
- Coding Sequence
- ATGGATTCTGCGAATGTAATAAGCATAGTTAATTTTCAAGAAATATGTCGTGTCTGTTTAAAAAATACGGATACTCTTGTTTCAATATCTTTATTTAAAATTATTAATATGATAAAGGCATGCACGTCGGTACAAGTAAATGAAAATGATCAATTACCACAACACATGTGTAATTCTTGTTGGCTTCAATTACAATGTGCATTTAATTTTAAACAATTATATGAGAAATCCGATGTAGTTTTAAGACAAATATTACAAGATCACCAAATATTCTATGACGATTATTGTGAGAAAGATAAAACAACAGATTCATGCAATAATTTAAACACAGATTCAACAAATTATGTTTGTGAATTATGTAACAGTAAATTTGATAAAGTATGGTATTTAGGATATCATATGCGGTGTGCACATTTTGCAACAGGCATAAAATGCAGTAAATGTACCTTAATTTGCTATCACCAATTACATTTAAAATTGCATGAAGAATCACATTCAAAGTTATACAAATTTACATGCGACATATGTAAGAAACCATTTAAAAGCGACGCATCGTTAAGAAAACATCAGGGATCACATCAAAATGTAAACCAAATTTCTAAAGATCATAATTATGGTGAAATAACTGATAAACAATTTTATGATTGTGAATTATGTAAAAGCAGATTTAATAATGTAGAGAGTTTAAGTTCTCATATGCGACAATCCCATAACGCTGAAGAACTGAAATGCAGTAAGTGTACATTAATATGTTATCACCAATTACATTTAAAATTACATGAAGAATCACATTCAATTTACAAACATAAATGTGACATTTGTGATAAACGATTTCAAATAGAAGCAAAGTTAAAACAACGTCGTGTTTTCTGTGTATTCCATTCAAATGAATCCACATCATTGTCTTATAATAATAATTTTGAAGAAAACGAAGAAATTAATTCACGCGAAGATGAAGAAACTGATTCAAAATCTGATATAATCTTACGAAAACTTTTACAAAATAATCAACTATTTGACGGTAATAATGTTGAGAAAAATGAACCAATAGATTCGTGCAAAGTTGAAAAAATAGATTCAAATTCCGACGTAATAAATAACCAACTATTTGAGAAAAGTGAAAAAATAGATTCATGTATAGATGAAAAAACTGATTCAAAAAATTATGTTTGCGAATTATGTAACAGTGAATTTGGAAAAGTATGGCATTTAGGTACTCATATGCGACATGCACATAATACTAAAGGATTGAAATGCAGTAAATGTGCTTTGATTTGTTATCATCCATTACATTTTAAAATGCATGAAGAATCACATTCAGTTTACAACCACAAATGTGACATTTGTGAAAAACCATTTAAAACTGAAGCAGAAATAAAACGCCATCGTATATCACACTCAAATATCCGATCACTAAAGTGTACTAAATGTGACGGTATTTTCAAAGATCAAAGGAGTATCATTTCTCATATGAAAACAAAACACTTGGATAAAGTATACACATCATGTCCGATATGTGGTAAACAAGTTTGGGATAACATACTTACAAGTCACATAAAAAGAGTGCATGGAACACGACGATTTTCATGTAACTATTGTACCATTAAATTCTATTATAAATCTAATTTGAATAGGCATATTAGAGAAATTCACCACAAAGTACTGAAACCTAGACATTTATGTAATATTTGCGGCAAAAGTATTCGCAGTTCAAGTGATTTAAGAATACATTTACAAACGCATACAGATGTACGTCCGTTTACATGCATTCGATGTAATAAAAGTTACAGATCAAAATCAGCATTGTCAGCACATATCCATCGTGATCATTTAAATCAGCGTAATTTTGTCTGCAATATATGCTCGCGAACCTTTTTTAGACGTGCTATGTTAGAGACACATATGCTTTCACACAGTGAAGACACTCAATTTAAATGTTATATTTGTGATAAATCTTTTAAATATAAAATGAGTTGGTGGCGACACATGAAAGCAAACCACAAATAG
- Protein Sequence
- MDSANVISIVNFQEICRVCLKNTDTLVSISLFKIINMIKACTSVQVNENDQLPQHMCNSCWLQLQCAFNFKQLYEKSDVVLRQILQDHQIFYDDYCEKDKTTDSCNNLNTDSTNYVCELCNSKFDKVWYLGYHMRCAHFATGIKCSKCTLICYHQLHLKLHEESHSKLYKFTCDICKKPFKSDASLRKHQGSHQNVNQISKDHNYGEITDKQFYDCELCKSRFNNVESLSSHMRQSHNAEELKCSKCTLICYHQLHLKLHEESHSIYKHKCDICDKRFQIEAKLKQRRVFCVFHSNESTSLSYNNNFEENEEINSREDEETDSKSDIILRKLLQNNQLFDGNNVEKNEPIDSCKVEKIDSNSDVINNQLFEKSEKIDSCIDEKTDSKNYVCELCNSEFGKVWHLGTHMRHAHNTKGLKCSKCALICYHPLHFKMHEESHSVYNHKCDICEKPFKTEAEIKRHRISHSNIRSLKCTKCDGIFKDQRSIISHMKTKHLDKVYTSCPICGKQVWDNILTSHIKRVHGTRRFSCNYCTIKFYYKSNLNRHIREIHHKVLKPRHLCNICGKSIRSSSDLRIHLQTHTDVRPFTCIRCNKSYRSKSALSAHIHRDHLNQRNFVCNICSRTFFRRAMLETHMLSHSEDTQFKCYICDKSFKYKMSWWRHMKANHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -