Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:27045668-27049033[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.51 11 7.1 4.4 5 23 311 329 310 329 0.76

2 10 4.3e-05 0.00093 19.9 1.2 1 23 335 357 335 357 0.99

3 10 0.00014 0.003 18.3 4.7 1 23 363 385 363 385 0.98

4 10 8.5e-05 0.0018 19.0 3.4 1 23 391 414 391 414 0.95

5 10 0.23 4.9 8.2 1.1 1 23 433 455 433 455 0.93

6 10 5.8e-07 1.3e-05 25.8 2.6 1 23 461 483 461 483 0.98

7 10 0.16 3.5 8.7 7.8 1 23 489 511 489 511 0.96

8 10 1.7e-05 0.00036 21.2 6.1 2 23 518 539 517 539 0.97

9 10 5.8e-05 0.0013 19.5 0.6 1 23 545 568 545 568 0.97

10 10 0.023 0.51 11.3 3.0 1 23 574 597 574 597 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.51	11	7.1	4.4	5	23	311	329	310	329	0.76
2	10	4.3e-05	0.00093	19.9	1.2	1	23	335	357	335	357	0.99
3	10	0.00014	0.003	18.3	4.7	1	23	363	385	363	385	0.98
4	10	8.5e-05	0.0018	19.0	3.4	1	23	391	414	391	414	0.95
5	10	0.23	4.9	8.2	1.1	1	23	433	455	433	455	0.93
6	10	5.8e-07	1.3e-05	25.8	2.6	1	23	461	483	461	483	0.98
7	10	0.16	3.5	8.7	7.8	1	23	489	511	489	511	0.96
8	10	1.7e-05	0.00036	21.2	6.1	2	23	518	539	517	539	0.97
9	10	5.8e-05	0.0013	19.5	0.6	1	23	545	568	545	568	0.97
10	10	0.023	0.51	11.3	3.0	1	23	574	597	574	597	0.95

Sequence Information

Coding Sequence: ATGGAATTTTCTTCCTTAGAAGATTTAAACGCACACATTGAAGAATATCAAAGTCAGAATTTCGTCCAATTATGGAAGAGAGACTCTCGCACCATTGAAAGCATGAAAAAAATTTGTCCAAATAGACTAAACAATTGCAAAACTGAACTAAAATATTATAGCGTTACCTTTGCTTGTATAAGAGGTGGGAGGCAATTTAAGACAAAAGGATGCGGTCTAAGAAATAAAGCAACATTTAAAGATGACTGTCCCATGGAAATTAAAGTAAAATTAACACCAGACGGTGAACATTTAAAAATTACATCACTCAATGAAAATCATAATCACACCAACGATAAAGAAGAATTTTCCTTATTACCCCGACAGAGAAAAAGGAACTCTGAAGAACAAAATGCTGAGTCAATTTTGCCCTCTTTAAGTAATAAGAAGAGAAATTGGAATTCTGAGGATAAAAATGAGGAAGTAAAATTATTAAAGAATTTAAAAACAAAAAAATATAATTTTGAAAATCTATGTCGAACATGTTCTTGTGAAGGGGATCTACAATCCCTTTTCGTTGAAGATCAAATCCGCATTGCTGATATGTTAACCGAAATAACCGATTTAAAAATTATGGAAGGAGATCAATTTCCACAGAGTATTTGTACGTTTTGTTTGGATAAATTAAAAAATGCCTACGATTTTATCAAGCAATGCTACAAAGTTCGTGCAGAATTCGAAGAACATTTAAGTAATTCTCTTGATGATTCGTTTTCTTCTACCGTTGATGCATCGACAGGAAAAGGTATTATTAACGATAATGAAATTAAACAAGAATTTGTTTTACATGTAGACAGTGAACTAGACTGGAATGATGGTACGAAAAATGAAGCTAGTGAATCCGAAAATGAAAAAAAACCGAAGAAAAAAATGTATAAACGAACTCTGCATGAATGCCCAGTATGTTCGAAAAAAACACAACATTTAAAAGAACATATGCGTTCCCATACCAAAGAAAAGCCGTTCAAATGTGAACTATGTGATATGGAATTTTCTTCACGTAGTAATCGCTCACGACATATTAAAATTCACTTAAACGATAGACCTCATGTATGTGAAATCTGTAATCGTGCGTTTACAATTCGTCATAAATTAAAAACTCATATGAAAACACATTCTACGGAAACGCCATTTAAATGCGAATTGTGTGAAAAATCATTCAAACATTTATCTCAACTGAAATTACATACGACAATTACACATCAAGACAGCGAACAATGTTCGGAAATTCTTGCCAGCATTGATACGCAGCGAAATTTTCTTTGTGATCTTTGTGGAAAAAGTTATTTAAGAAAACATGTATTTGAAGGCCATTTACGTGCTCATTCTGGCGAAAAACCTTTTTCTTGTCCAGTATGTGGAAAAATGTTTTCCACATCTTCGCTGTTATGTTTACACCGGAAAACTCACGACGAAGAAAAACCATTTAAATGCTCTTACTGTGATAAACATTTTCGCATGAAAAAATTATGTAGGCGTCATGAATTAATTCACACTGGAGAAAAACCCCTAAAATGTGATTTGTGTGGGAAATGTTTCCGACAATCGGGACATTTGTATCGGCATAAAAGGTCACATACGGGAGAAAAACCTTTTGCTTGTACAATTTGTGATAAACATTTTATAGTTAGAGATCGTTTGAATGCTCATATTCGAGTACAACATACGGGAGAAACACCATATGCGTGCTCGATTTGTCATAAGAAATTTAAAGACTTAAAAATCATGAGACGGCATGAGAAGAAGGTTCATGCAGCTGTCAAATGA
Protein Sequence: MEFSSLEDLNAHIEEYQSQNFVQLWKRDSRTIESMKKICPNRLNNCKTELKYYSVTFACIRGGRQFKTKGCGLRNKATFKDDCPMEIKVKLTPDGEHLKITSLNENHNHTNDKEEFSLLPRQRKRNSEEQNAESILPSLSNKKRNWNSEDKNEEVKLLKNLKTKKYNFENLCRTCSCEGDLQSLFVEDQIRIADMLTEITDLKIMEGDQFPQSICTFCLDKLKNAYDFIKQCYKVRAEFEEHLSNSLDDSFSSTVDASTGKGIINDNEIKQEFVLHVDSELDWNDGTKNEASESENEKKPKKKMYKRTLHECPVCSKKTQHLKEHMRSHTKEKPFKCELCDMEFSSRSNRSRHIKIHLNDRPHVCEICNRAFTIRHKLKTHMKTHSTETPFKCELCEKSFKHLSQLKLHTTITHQDSEQCSEILASIDTQRNFLCDLCGKSYLRKHVFEGHLRAHSGEKPFSCPVCGKMFSTSSLLCLHRKTHDEEKPFKCSYCDKHFRMKKLCRRHELIHTGEKPLKCDLCGKCFRQSGHLYRHKRSHTGEKPFACTICDKHFIVRDRLNAHIRVQHTGETPYACSICHKKFKDLKIMRRHEKKVHAAVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061226;
90% Identity: -
80% Identity: -