Ccar023403.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:70803379-70806648[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0016 0.034 15.0 2.5 3 23 19 39 17 39 0.95 2 15 0.049 1.1 10.3 1.9 1 23 46 69 46 69 0.97 3 15 0.14 3.1 8.8 1.6 2 23 77 96 76 96 0.96 4 15 0.025 0.54 11.2 2.8 1 23 103 126 103 126 0.96 5 15 1.4 30 5.7 1.0 2 23 134 153 134 153 0.86 6 15 0.00011 0.0024 18.6 1.4 1 23 158 181 158 181 0.98 7 15 1e-05 0.00022 21.9 1.5 3 23 194 214 193 214 0.99 8 15 0.85 18 6.4 8.3 1 23 220 242 220 242 0.90 9 15 0.0019 0.041 14.7 1.8 1 23 248 270 248 270 0.98 10 15 6e-05 0.0013 19.5 0.7 2 23 390 412 389 412 0.94 11 15 0.001 0.022 15.6 1.5 1 23 445 468 445 468 0.98 12 15 7.2 1.6e+02 3.5 1.6 3 23 482 502 481 502 0.97 13 15 0.048 1 10.3 5.4 1 23 508 530 508 530 0.98 14 15 2.2e-07 4.7e-06 27.1 0.6 1 23 536 558 536 558 0.99 15 15 0.00016 0.0035 18.1 0.1 1 23 564 586 564 586 0.98
Sequence Information
- Coding Sequence
- ATGATCATAGACACCATTTCAAGTAACGTTAAGGAGACAGAAGTTATGTGGAATTGTCTACAATGTAGTAAAACATTTAAAGAAAAGAAAACATTACAAAGGCATTCTAAAATACATGATAAAAAGCGTAAAGCATTTGAATGTACTGTATGCAGCTCAACATTTTTACATGTTTCATCTTTAAAAAAACATTTGCAAAGTATACATGACACAAATCGTCAATCAAAAACGTGTAAAATATGTAATAAATCGATATTAACATCATTAAAACGCCACATGGAAACGCATGACGAAAATCGTAAAACATTTCAATGTTTACGATGTGATCAAACATTTTTACATTCGTCTACATTAAAAACTCACGTTCAACAAATACACGGTACTAAAAAGTTACGAGAAAAATGTCCTTCATGTGAGAAAACTGTTAGTAATTTAAAAAACCATATAAAATTTAATCATACCAAACATAAATTTCAATGTTTGCAATGTGATCGAACATTTGCATTTAATGCAACATTAAAACAACATGTACAAACATTTCATCAACGTACTGCTAAACGTAAAGAAGAAAATGTTTTGTGTACATTATGTGGGAAAGATTTTAAAACTAATAGTGGATATAAATATCATATGCGCACGCATGTTAATGATAAACCATTTAAATGTCGGTATTGTGATAAAACATTTTGTTCAAGTGGGTCTAGGACGTGCCACGAACGACAACATACCGATGAACGGCCGTATTCGTGTATGTATTGTGTTAAACGGTTTCGTTCGAAAAATGTTTTGTTAAGCCATACACGTATACACACGGGTGAGAGACCGTTTGTTGACTCAGATGATGCCCTTCCTAAATTAGTATGCTCCGATTGTTTTGGTAAAATATGTGAATGTTATGCATTTAAAACTCAATGCGAAATAAATGAAGAAAATCTAACAAAATGTTTAACAAGTACATCTTCACCCAAACCTGATGACGATGTCAAGAAATTAATTATTAAATGCGAAGAAATTGATAAAGTAGGATCACCAGGTCTTTCCGTCAAGGAAGATGACGACATCGACGAGCATAAATCATTACCGTTAACCTCAGAAGAAGATGAAGAAAGTGAAACAGAGAATATAGTTAAAGTAAAGAAATTAAGATGTAAAAAAGATATTTCAGATTCTTGTACATACTGTAACAAGAAATTTGTAGATCAATATGTCCTAAAACGACATATCGAAAATATGCACACAAAAATACGTAAAAAAGAAACATGTTCAATATGCCAACGAACCGTAATGTGTATGAAACTGCACTTGCGTCGAAAACATAACGGCGAACATAAATACAAATGTCGATTATGCGAGGAAAAATTTTTGTATAAATCAAATTTAACTGAGCATATACGAGTTAAGCATGATACGGATAAGCAACATATGAAAAAAGAACGTTTATTGTGTACATATTGCGGAAATTTCTTACATTCTCGGAAGGCTTATGGATATCACATGTTGTCACATAAAGGGGAAAAACCATTTCAATGTAGCTTTTGTATAAAGAAATTTAGATCACATAATTATTTAAAAATACATGAAAGGTCTCATACGGATGAAAGACCTTATCCATGTACGTATTGTGATAGAGCATTTCGAGATAATAGTACGTTAAAAGGACATATAAGGACACATACGGGAGAAAAGCCCTTTATATGTCCTATATGTAATCGAGGGTTTGCACAACGGATAGCAATGAAAACACATTTAAAAATACATTAA
- Protein Sequence
- MIIDTISSNVKETEVMWNCLQCSKTFKEKKTLQRHSKIHDKKRKAFECTVCSSTFLHVSSLKKHLQSIHDTNRQSKTCKICNKSILTSLKRHMETHDENRKTFQCLRCDQTFLHSSTLKTHVQQIHGTKKLREKCPSCEKTVSNLKNHIKFNHTKHKFQCLQCDRTFAFNATLKQHVQTFHQRTAKRKEENVLCTLCGKDFKTNSGYKYHMRTHVNDKPFKCRYCDKTFCSSGSRTCHERQHTDERPYSCMYCVKRFRSKNVLLSHTRIHTGERPFVDSDDALPKLVCSDCFGKICECYAFKTQCEINEENLTKCLTSTSSPKPDDDVKKLIIKCEEIDKVGSPGLSVKEDDDIDEHKSLPLTSEEDEESETENIVKVKKLRCKKDISDSCTYCNKKFVDQYVLKRHIENMHTKIRKKETCSICQRTVMCMKLHLRRKHNGEHKYKCRLCEEKFLYKSNLTEHIRVKHDTDKQHMKKERLLCTYCGNFLHSRKAYGYHMLSHKGEKPFQCSFCIKKFRSHNYLKIHERSHTDERPYPCTYCDRAFRDNSTLKGHIRTHTGEKPFICPICNRGFAQRIAMKTHLKIH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -