Ccar009085.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997757.1:42921862-42932332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.9e-05 0.0015 19.3 2.6 1 21 13 33 13 34 0.96 2 12 0.0001 0.0022 18.7 5.4 1 23 42 65 42 66 0.96 3 12 0.00091 0.02 15.7 1.8 1 21 93 113 93 114 0.96 4 12 6 1.3e+02 3.7 0.6 1 12 122 133 122 135 0.85 5 12 0.00016 0.0034 18.1 3.7 1 20 146 165 146 167 0.95 6 12 6.3e-05 0.0014 19.4 5.4 1 23 175 198 175 198 0.97 7 12 0.00053 0.012 16.5 2.6 1 21 239 259 239 260 0.96 8 12 0.0065 0.14 13.1 1.8 1 20 268 287 268 292 0.90 9 12 0.00068 0.015 16.1 4.6 1 21 300 320 300 321 0.96 10 12 0.014 0.3 12.0 1.1 1 20 329 348 329 349 0.95 11 12 0.0029 0.064 14.1 3.1 1 21 361 381 361 382 0.96 12 12 0.057 1.2 10.1 0.6 2 23 391 413 390 413 0.92
Sequence Information
- Coding Sequence
- ATGGTGAATTTTGATGGTTATTTTAATGGACAATTTTTTATTTGCACAAAATGTGGATCTTCATATACAAGAAAATGTAATTTAAATAGGCATATGAAATGGGAATGCGGTGTACCACCACAATTTTCATGTACCATTTGTGAAAAGAAATTTAGCCGTAAACATTATTTAGAAGTTCATAAAATGAAAGCGCATCATATCTTTGATGAAAAACGATTTTTCCATGAATCGTTCTTGGACAACTTTGGCTATGGTAAAATGTTTATTAAAAAAAAATTCCCTTGCCATCAATGTAATCGTTCCTATGAATTAAAAACAAGTTTGACACGTCATATTAAATTTGAATGTGGCGTTGAACGTAAATTCACGTGTGAAGTTTGTGGATTTCTATTCTACCAAAATAATATTCAAAAAACTACTTCTACAGAGAATAAATATAAGTGTACAAAATGTCATCATACATACGGACGTAAAGACAATTTACGAAGACATTTAATATATGAATGTGGTGTTTTACCAAAATTTCATTGTGATTATTGTGGTCGTAATTTTACACGTAAACATACGTTAAAAGGTCATTTAAAAATGATACATAATGCATATTTAGATGAAACTACATTAAATAATAGTTTAAATAATAGTCTAATTGTTGAAGAATTTAATAATCATCCATTATATAATAATTCAACTTATGAAAATCCAAATAATTATGAATATATATGCCATCAATGTAATCGTCCATATAAATACAGTTTCACATTGCAGCGACATTTACGCTACGAATGTCAAAAACCACCTGCATTCAGTTGCCCATTTTGTCATTATAAATCAAAACGAAAAGCTGATTTACAAGTTCATGTAGTGCGTTCAACACATGGAAATCCGAATAATTATCAATTCGTTTGCCATCAATGTAACCGTTCGTATAAACACAAAATCACGTTACATCGACATTTACGTTGGGAATGTCAAAAACCAGCAACGTTTAGTTGTCCATTTTGTTCTTATAAATCAAAACGAAAAGATAAATTACGAAATCACGTAGTGTGTTCAACTTATGAAAATCCCAACAATTATGAATTCGTATGCCATCAATGTTATCGTCCATATAAATACAGTTTTACATTACAGCGACATTTACGTTACGAATGTAAAAAGCTACCAACAGTTAGTTGTCCATATTGTACTTATAAATCGAAACGAAAAGATGAAATGCGAGGTCACGTAGTACGCAAACATAAAATGATATTTTAA
- Protein Sequence
- MVNFDGYFNGQFFICTKCGSSYTRKCNLNRHMKWECGVPPQFSCTICEKKFSRKHYLEVHKMKAHHIFDEKRFFHESFLDNFGYGKMFIKKKFPCHQCNRSYELKTSLTRHIKFECGVERKFTCEVCGFLFYQNNIQKTTSTENKYKCTKCHHTYGRKDNLRRHLIYECGVLPKFHCDYCGRNFTRKHTLKGHLKMIHNAYLDETTLNNSLNNSLIVEEFNNHPLYNNSTYENPNNYEYICHQCNRPYKYSFTLQRHLRYECQKPPAFSCPFCHYKSKRKADLQVHVVRSTHGNPNNYQFVCHQCNRSYKHKITLHRHLRWECQKPATFSCPFCSYKSKRKDKLRNHVVCSTYENPNNYEFVCHQCYRPYKYSFTLQRHLRYECKKLPTVSCPYCTYKSKRKDEMRGHVVRKHKMIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -