Ccar023252.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:2170423-2176741[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.26 5.5 8.0 6.8 2 23 149 171 148 171 0.96 2 14 0.016 0.34 11.8 0.8 2 19 177 194 176 197 0.94 3 14 0.0058 0.12 13.2 1.2 3 23 206 227 205 227 0.90 4 14 0.1 2.2 9.3 4.7 1 23 233 256 233 256 0.89 5 14 0.38 8.1 7.5 0.3 2 23 265 285 264 285 0.95 6 14 0.03 0.64 11.0 5.4 2 23 293 315 292 315 0.96 7 14 0.0056 0.12 13.2 3.0 3 23 326 346 324 346 0.93 8 14 3.9e-06 8.4e-05 23.2 1.5 1 23 352 375 352 375 0.96 9 14 0.43 9.3 7.3 0.3 2 23 385 405 384 405 0.94 10 14 0.13 2.8 9.0 3.7 1 23 412 435 412 435 0.97 11 14 8.2e-06 0.00018 22.2 1.0 3 23 446 466 444 466 0.95 12 14 0.053 1.1 10.2 2.6 1 23 472 495 472 495 0.96 13 14 2.2e-05 0.00046 20.9 2.9 1 23 501 523 501 523 0.97 14 14 1.6e-06 3.4e-05 24.4 0.8 1 23 529 552 529 552 0.97
Sequence Information
- Coding Sequence
- ATGGAAGTAAAAATATCAGATTTTACAATAATTTGTCGAGTTTGTTTAAAACTACCAGATCAACCCGTCTCGATTTCTTTATTTCAAATTATTGAAATGATGACAACATGTACTTCTGTTCAAATTTATGCAAATGATAATTTACCAAATCAATTATGTGAAAATTGTTTTATCGAATTACAAAATTCATATAATTTTAAACAATTAGCAGAAAGATCCGATCGAAATTTACGAAAATTATACGAAGAAACTCAACAATACGATGATCAAAGATCTGAATTGGATGATGATAATCTCGATTTGGAAAGTATTAAAAATGAACCACACGATAATCACTCGGAAGATATTAAATTTGAACGAATTAATGAAATATCTAAGTTCAAATATGAAAGCGATGAAGATACAAAACCCGTTGAAGAAGAAGAAAATAAAAGAATTCATCTTGAATGCGACGAATGTGATTTTACATGTGAACATCTTCATCATTTAGGATTACATATGAAACGGTATCATCAAACTAAAGGCATGCGCTGCAGTAAATGTAACACTCTATTTTATCATCCCCAACAATTAAAACGACACGAAGACATCCAATTATGTTCGAAATCAAAATTCTGTACAGAATGTAACACGAATTTCAAAACCAACAATAGTTTATTAAAACATTCGATTCTCGTACACGGTACAGATAAACCACATAAATGTTTCCAATGTAATAAAAGTTTTAAATTGTATACATCATTAAAATTACATGATCGTTCTATGCACATGCGCAGTAATGATGTACGTACACCATGTGATATATGTGGTAAACGAATATTAAAGCGGGAAATTAAACGACATTTAAAAATCCATAAAAATGATCGAGAAATGATTAAATGCGAGCAATGTGATAAGAAATTCTTACATCAATGTTCGTTAAAAATTCATATACAACGATTTCATGAGAATAAACCACGTGAATACAAGCATTTATGTACGATTTGTGGTAAAAAATTTGGTACACGCTGTGATTTAGATCGTCACGGATCTGTACATCGAAATGATCGACCGTTTGAATGTCCACAATGTGGGAAAGGTTTTAAATTAAATCATAATCTTAAATCACATATCAAACAGATTCATATGAATATGAAAAAGAATAATCGGATACCGTGTAAAGTGTGTGGTAAAATGATCTCGAAAACGAACATGAAACCACATTTACAAACACATAAAGCTGTCCGTGACATATATAATTGTACACAATGTTCGAAACAATTTCTACATCAGTTATCGTTGGAGCAACATATACAAAAGTTTCATGAGAAAATCGTTCGAGAATTTCGACATTTATGTAATATGTGCGGTAAAGGGTTTAATACACGGGCCGAATTAAAAATTCACATGTTGTCGCATAGCGATGAGAAAACGTTTGCATGTCAAACGTGTAACATGAAATATAAAACGATGCATGGGCTACGATATCATGTGAAATCGGTTCATTTAAATTTGAAACCACATCCGTGTCCGATATGCTCGAGACATTTTTCCACACGGAGTGTTGTTGAACGTCATATGCGTACGCATACTGGTGAGCGACCGTTTGTTTGTGCTTTATGTGAAAAATCGTTTAATCAAAAAAGTACGCTAACGACACATATGAGACTTGTACATTCTACGTGA
- Protein Sequence
- MEVKISDFTIICRVCLKLPDQPVSISLFQIIEMMTTCTSVQIYANDNLPNQLCENCFIELQNSYNFKQLAERSDRNLRKLYEETQQYDDQRSELDDDNLDLESIKNEPHDNHSEDIKFERINEISKFKYESDEDTKPVEEEENKRIHLECDECDFTCEHLHHLGLHMKRYHQTKGMRCSKCNTLFYHPQQLKRHEDIQLCSKSKFCTECNTNFKTNNSLLKHSILVHGTDKPHKCFQCNKSFKLYTSLKLHDRSMHMRSNDVRTPCDICGKRILKREIKRHLKIHKNDREMIKCEQCDKKFLHQCSLKIHIQRFHENKPREYKHLCTICGKKFGTRCDLDRHGSVHRNDRPFECPQCGKGFKLNHNLKSHIKQIHMNMKKNNRIPCKVCGKMISKTNMKPHLQTHKAVRDIYNCTQCSKQFLHQLSLEQHIQKFHEKIVREFRHLCNMCGKGFNTRAELKIHMLSHSDEKTFACQTCNMKYKTMHGLRYHVKSVHLNLKPHPCPICSRHFSTRSVVERHMRTHTGERPFVCALCEKSFNQKSTLTTHMRLVHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061151;
- 90% Identity
- -
- 80% Identity
- -