Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:74816413-74821384[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.001 0.023 15.5 0.2 3 23 137 157 135 157 0.97

2 12 1.8e-05 0.00039 21.1 1.1 2 23 166 187 166 187 0.98

3 12 0.026 0.55 11.2 2.3 1 23 193 216 193 216 0.97

4 12 0.057 1.2 10.1 0.6 1 23 223 246 223 246 0.97

5 12 0.0001 0.0022 18.8 2.4 2 23 253 274 252 274 0.96

6 12 0.00046 0.0099 16.7 5.7 1 23 278 301 278 301 0.94

7 12 0.26 5.6 8.0 0.6 2 20 334 352 333 356 0.93

8 12 4.9 1.1e+02 4.0 3.8 1 23 367 390 367 390 0.93

9 12 0.047 1 10.3 3.9 1 23 396 419 396 419 0.94

10 12 7.8e-06 0.00017 22.2 1.3 2 23 428 450 427 450 0.96

11 12 9.3e-07 2e-05 25.1 1.4 1 23 456 478 456 478 0.98

12 12 4.3e-06 9.3e-05 23.1 0.6 1 23 484 506 484 506 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.001	0.023	15.5	0.2	3	23	137	157	135	157	0.97
2	12	1.8e-05	0.00039	21.1	1.1	2	23	166	187	166	187	0.98
3	12	0.026	0.55	11.2	2.3	1	23	193	216	193	216	0.97
4	12	0.057	1.2	10.1	0.6	1	23	223	246	223	246	0.97
5	12	0.0001	0.0022	18.8	2.4	2	23	253	274	252	274	0.96
6	12	0.00046	0.0099	16.7	5.7	1	23	278	301	278	301	0.94
7	12	0.26	5.6	8.0	0.6	2	20	334	352	333	356	0.93
8	12	4.9	1.1e+02	4.0	3.8	1	23	367	390	367	390	0.93
9	12	0.047	1	10.3	3.9	1	23	396	419	396	419	0.94
10	12	7.8e-06	0.00017	22.2	1.3	2	23	428	450	427	450	0.96
11	12	9.3e-07	2e-05	25.1	1.4	1	23	456	478	456	478	0.98
12	12	4.3e-06	9.3e-05	23.1	0.6	1	23	484	506	484	506	0.99

Sequence Information

Coding Sequence: ATGTCCTTAACGTTCACATCGGTAACTAAATATGATTTTGATAAAATATGTAGAACTTGTTTAGAATTCAAGCAAGGGATGATTTCCATCTGCACATCTGAATCAGATGTTTTACAAATGTTACAAATTTTTACAACAATTAAGATAAATGAAAATAATGAATTACCGACACAAATTTGTAATGATTGTATTTTTAAAACTTACCAAACAATTAATTTTAAAAAACAGTGTGAACGATCCGAACAATATTTATTAGAATTATTAAATGAACAGACCAACGATGATAAAAAATGGTTTAAAAATACAACAACAGACAAAGATAACACTATTGAAAATATATCAATAAAAACTCGCATTAATTGGTTACAAAGTTTAAGTACAGATCAATGTGATTTAAGTAAATTATTATGTTTAATATGTAATAAAAAATTAGTAAATATTTCATCGTTAGCGAGACACATGGAGACGCATGATACAAATAGAAAGATCTGTGCAACTTGTAACATTTGTAATAAAGGATTCTATGAGAATGGTAATTATCAAAGACATATGCAGCGTCATCAACGAGATGCTAAATATAAATGTGATTATTGTTTAAAATCATTTTACGAACTAAATATATTAAAAAAACATTTACAAAAACAACATTTAAATGAATTAAAAGAATACAAATGTATGGAATGTAATAAATTATATATCATTGAATCAGAATATCAATTACATATTAAATTAAAACATATGAATGAATATGATTTAAAATGTAAATATTGTAATAAAGGTTTTATTTATAAAAATAAATTACAAAAACATTTATTACAACATGAGAAACAATATTATTGTACACAATGTAATAAACAATATAAGAATTCATCAACGTTACGTAAACATATCTATCATACGCATAATAATAAAAAGGATAAACAAGTATGTCAAATATGTGGGAAAACGGTTTTACATATGAAGCGACATTTATTGTACGCGCACAGTGAAGACAACGTAAAATGTCCAGAATGTTGCAAGGAATTCCCATCAACATACGGCCTAAACATTCATATATGGAAATTACATAAAAATTCATCGGGACCACGTAAAAAACCATACTTATGTTCAACATGCGGCTACACGTGTGAATGTCGTGCTGCACTAAAAATACATTACGAGCGTAAACATGCTGAAATACGTGCGTACACATGTCAAATATGTAGCAAAGGTTTTAAAACACGTACAGAACATTTACGACATGTACGATTTACACACAATACCGAATCACGACCAAATCTAAAATGTACCATTTGTGAGAAACAATTTAAACGTAGAAGTGCGTTAGCATATCATATGCGTTACTCACATACAACTGAACGTAGATTTAATTGTACAGGATGTAACAAACAATTTAAAACTAGTGGTACACTTAAGATACATATGCGTATTCATACGGGTGAGCGACCATATGAATGTAAATTTTGTGGAAAAGCGTTTGGACAAGGGAGTACGTTGAAAACACATATGAAAGTACATGCTACAGCTACCAGTGCTGCTGCCACAACATCTACTCCAGGTGTAGCTGGTGCAACAACTAACTCAGTTCAACAATCAAATGTTATGATTGATTCAACTACAGCTAATTTTTTACTAAATCATTCATAA
Protein Sequence: MSLTFTSVTKYDFDKICRTCLEFKQGMISICTSESDVLQMLQIFTTIKINENNELPTQICNDCIFKTYQTINFKKQCERSEQYLLELLNEQTNDDKKWFKNTTTDKDNTIENISIKTRINWLQSLSTDQCDLSKLLCLICNKKLVNISSLARHMETHDTNRKICATCNICNKGFYENGNYQRHMQRHQRDAKYKCDYCLKSFYELNILKKHLQKQHLNELKEYKCMECNKLYIIESEYQLHIKLKHMNEYDLKCKYCNKGFIYKNKLQKHLLQHEKQYYCTQCNKQYKNSSTLRKHIYHTHNNKKDKQVCQICGKTVLHMKRHLLYAHSEDNVKCPECCKEFPSTYGLNIHIWKLHKNSSGPRKKPYLCSTCGYTCECRAALKIHYERKHAEIRAYTCQICSKGFKTRTEHLRHVRFTHNTESRPNLKCTICEKQFKRRSALAYHMRYSHTTERRFNCTGCNKQFKTSGTLKIHMRIHTGERPYECKFCGKAFGQGSTLKTHMKVHATATSAAATTSTPGVAGATTNSVQQSNVMIDSTTANFLLNHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -