Ccar023058.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:124151624-124154483[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 9.9e-06 0.00021 21.9 3.3 2 23 182 203 181 203 0.97 2 11 0.058 1.2 10.1 2.5 1 23 211 233 211 233 0.96 3 11 0.067 1.4 9.9 1.1 1 23 239 262 239 262 0.97 4 11 0.0093 0.2 12.6 1.4 2 23 268 290 267 290 0.97 5 11 8.5e-06 0.00018 22.1 3.4 1 23 295 317 295 317 0.96 6 11 1.1e-05 0.00024 21.8 2.6 1 23 323 346 323 346 0.96 7 11 1.6e-05 0.00034 21.3 5.0 1 23 380 403 380 403 0.98 8 11 1.3e-05 0.00028 21.5 0.3 1 23 412 435 412 435 0.94 9 11 0.00022 0.0048 17.7 3.8 1 23 441 464 441 464 0.97 10 11 0.019 0.41 11.6 3.1 1 23 470 492 470 492 0.97 11 11 0.0002 0.0044 17.8 5.1 1 23 498 520 498 520 0.97
Sequence Information
- Coding Sequence
- ATGAATTCTAATCTTTTAACTGTAAATGATTTTAATGTTATATGCCGAATATGTTTAATGGCAAAAGAAAATATGTTATATTTAACAAATGAAGAATTTCGAATGTTGGACGAATGTACTTTGAAGCAAGAAACATACCCAACAGACAAATTTCCACAACAAATGTGTATAGATTGTTCAACGCAATTAAGAAATTCGTATCAATTCAAGCAACAATGTGTATTATCCGTAAAAATATTATACGAAGTTCTTTCAAGAAAGGATCGATCAAGTGAAATTATTGTAAAACCTGAACCAATTACATTTGATTTGGAAACAAACTCGGATCATAATTCGATAAAACTTGAAACAGAACAAATTGAAACTACACTGATAATCAAAGATGAAGATGCTGTTAATTTTGATGATGATTTAGTTGATGTTGACGATGATAAAAATTCATTGCATAACAGTGACGATGAGGAAATGGATCAAGAGAAACTTGAATTAGCAAAATGTAAAATAGAATTATTAGCGAATACATCATGTGAATTACTCGATTTAACTTGTGATATATGTAATCGAATATTTCGACATCGTTCGAAATTACTGAAACATATTAAAACACATCTTAAAGATAAAAAATATTCACATTTTTGTAAGCTATGTGATCAAGGATTTTATTGGATAAGTAGTTTAGAACGACATACGCGAAGACATTCTACGGGACCAAGTTTTAAATGTGAATTATGTTCAAAAGATTTTTTCGAATTACCCGCATTTGCTATTCATCATAGAAAGGTACACAAGAGTAAACCAGTTAAATGTGAAGAATGTTCACGAAGATTTTTACATCCCTTACAATTGGAACGTCATCAACAACGTGGCCACGGCGTAAAAGAACATGTATGTGATATTTGTGGTGAAAAATTCGCACAAAATTCACATTTAAAGCGGCATCGTACGAATCATTCAAAGGAAAAACCATTTGCGTGTACTTATTGTGATAAAAAATATAAACACCAATCGGCTTTAAAAACACATGTGCTTACCGAACATACGAAAACTGTTCAAGACACTACTGCACTATGTTTTGTATGCGGTAAATCTGTTAAAGATATCGGTACACACTTACTTTCGCATAAACAAACGTCCGATCATAAATGTTCAATATGTTCGAAAACATACAAAACGAAATACAAACTAAATGCACATATAAAAACAAGACATCCATCCGATGGTATTGTTAAAAAATATTATTGTAAAATATGTAATAAATCGGTAATAGAACGTAGTAATTTAAAAAAACATATGGCCGCTGCACATATAACGGTTAAACGGCACGAGTGTTCGTATTGTGGTAAAATGTATAAATTAAAATCACATGTTAATCAACATGTACGAAGTGTTCATTTAGAGGAACGATCTCATATTTGTACGGTTTGTAAGAAGGGTTTCTTTTCGAAGCATATTTTAGAAGATCATATGATCACACATACAGGTGAACGACCGCATACTTGTAATGTATGTGGTAAAACATTTGGCCGTAAAAATCATTTATATGTGCACTCGAAATCACATTCTACTTAG
- Protein Sequence
- MNSNLLTVNDFNVICRICLMAKENMLYLTNEEFRMLDECTLKQETYPTDKFPQQMCIDCSTQLRNSYQFKQQCVLSVKILYEVLSRKDRSSEIIVKPEPITFDLETNSDHNSIKLETEQIETTLIIKDEDAVNFDDDLVDVDDDKNSLHNSDDEEMDQEKLELAKCKIELLANTSCELLDLTCDICNRIFRHRSKLLKHIKTHLKDKKYSHFCKLCDQGFYWISSLERHTRRHSTGPSFKCELCSKDFFELPAFAIHHRKVHKSKPVKCEECSRRFLHPLQLERHQQRGHGVKEHVCDICGEKFAQNSHLKRHRTNHSKEKPFACTYCDKKYKHQSALKTHVLTEHTKTVQDTTALCFVCGKSVKDIGTHLLSHKQTSDHKCSICSKTYKTKYKLNAHIKTRHPSDGIVKKYYCKICNKSVIERSNLKKHMAAAHITVKRHECSYCGKMYKLKSHVNQHVRSVHLEERSHICTVCKKGFFSKHILEDHMITHTGERPHTCNVCGKTFGRKNHLYVHSKSHST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -