Ccar022332.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- gtf3a
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:51266487-51268489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0075 0.16 12.9 0.1 2 23 228 250 227 250 0.96 2 11 4.1 88 4.2 5.7 2 23 256 277 255 277 0.97 3 11 5.4e-05 0.0012 19.6 0.9 2 23 283 304 282 304 0.97 4 11 0.0001 0.0022 18.8 0.3 3 23 311 332 310 332 0.95 5 11 5.3e-05 0.0011 19.6 2.1 3 23 338 359 336 359 0.95 6 11 0.15 3.3 8.7 0.4 2 23 369 389 369 389 0.94 7 11 2.5e-05 0.00055 20.6 1.1 1 23 395 418 395 418 0.98 8 11 0.0012 0.025 15.4 8.2 3 23 429 449 425 449 0.92 9 11 9.7e-05 0.0021 18.8 1.2 1 23 455 478 455 478 0.96 10 11 0.086 1.9 9.5 1.3 1 23 484 506 484 506 0.97 11 11 7.8e-07 1.7e-05 25.4 0.1 1 23 512 534 512 534 0.99
Sequence Information
- Coding Sequence
- ATGGATACAAAGTGTATTCTAGTGTCTGATTTTGAGAAAGTTTGCCGTATTTGTATGAAATTTGATAAATCATTTTTATCAATAAATACATTTAAAATAATTGAAATGATAGTAGAGTGTACTTCGGTACAGATTTGGGAAAATGATGATTTACCAAATCAAATATGTAATGCATGTTTTCTTCAATTGCAAAATACTATCAGTTTCAAACAATTGTGTGAGAAATCCGATAACACTTTTCGCCAAATTCTTGGTCAAAATAAAATTAATGTTGACAAACATTCCAATAATTTTGCTGTAAATGAGAATGATTTTTCCAATGTAAAAGTTGAAAGAGATAATTTTAATTTTGAATATGATAATGATGTTCTATTGAATAGCCTCTCAATAGATATTAAGGAAGAGGATACATCTAAAATTGAAAGTGAAAACATTAAAAGCGATGAAGATGCTGATGATGATGATGACGATGTATGCTTAGCTAAGAGATTAACTAGAAGCAAAATTGATAGACCAAAAAGAATAAAAAGTTCAACAAAAAGGAAAAATCATGATTGGAAAGATTCTAGTAGTGAGAATGAAGACGATGAAGATCCAGATTGGGATCCAAGTTGGAATAATGAAGACGTAAAACCAAGTGATCTTGAATCCAATGATGAAGATGATAAATCTTCAATAATAAAATGCGATGAGTGTGATGTCATATACAAAACACCGATTGCACTTGGTTTACATATGCAGAGAAAACATAACGCAGAGGGTACTCAATGTAGAAAGTGTTCTGTAATATGTTACCATCCATTACATTTACGTGCACATGAAAAGTCACACTTTTCAACGAATTTACAATGTCCAACATGTAACTTAACATTCTCAAAATTAGCTTTATTAAGAAAACACCAATACACACATGGTGATCGTACAGTTGCATGTCCAAAATGTGATTCGTCATTCCGACGTGATTACGAATTACGTAGGCATATGATAAATGTACATAAAGAAACAATGCATTGTGAATATTGTCCTGAAACGTTTCGTAATAAATTATTATTGAAACGACATATGAAAGAATTGCATCCACAAATAAAAATAAAACAATATCGTACTTGTGATGTATGTGGTAAATCAATAATACGACGTTATTTTCAAAATCATATGGCAACACATGGCGATCGTAAACAGTATACATGCGAAGGTTGTTCAAAGATATTTATGTATAAAGATTCATTACGACGTCATGTGAAACGTGTCCATGAAAATCAACCACCTGAATATAAATGTTTATGTAATATATGTGGACGTAAATTTCATACTTCTAGTAATTTACATCGACATTTTCTAACACATACTAAGGATCGTCCGTATGCATGTGATAAATGTGATAAAACTTACCGCACTCAGTTCATGTTAAAAATGCACGTATCACGAATTCACTTAAATGAACGTAATTTTATTTGTACATTTTGTTCACAAGCATTTTTTGATAAGAAAATTTTATTGAATCATGTGAGACGACATACGGGTGAACGACCATATCAGTGCGATGTATGTGATAAAGCGTTTATTCAAAAAATTGCATTGAAAATTCATATGAAAGTACATGAGAAATCATTATTAAATGTACTTTCATAA
- Protein Sequence
- MDTKCILVSDFEKVCRICMKFDKSFLSINTFKIIEMIVECTSVQIWENDDLPNQICNACFLQLQNTISFKQLCEKSDNTFRQILGQNKINVDKHSNNFAVNENDFSNVKVERDNFNFEYDNDVLLNSLSIDIKEEDTSKIESENIKSDEDADDDDDDVCLAKRLTRSKIDRPKRIKSSTKRKNHDWKDSSSENEDDEDPDWDPSWNNEDVKPSDLESNDEDDKSSIIKCDECDVIYKTPIALGLHMQRKHNAEGTQCRKCSVICYHPLHLRAHEKSHFSTNLQCPTCNLTFSKLALLRKHQYTHGDRTVACPKCDSSFRRDYELRRHMINVHKETMHCEYCPETFRNKLLLKRHMKELHPQIKIKQYRTCDVCGKSIIRRYFQNHMATHGDRKQYTCEGCSKIFMYKDSLRRHVKRVHENQPPEYKCLCNICGRKFHTSSNLHRHFLTHTKDRPYACDKCDKTYRTQFMLKMHVSRIHLNERNFICTFCSQAFFDKKILLNHVRRHTGERPYQCDVCDKAFIQKIALKIHMKVHEKSLLNVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -