Ccar011482.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- Hivep3
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:23082478-23088067[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.9 1.5e+02 3.5 0.8 2 19 130 147 129 152 0.85 2 10 0.00027 0.0058 17.4 0.5 1 23 158 180 158 180 0.97 3 10 5.1e-06 0.00011 22.8 3.0 1 23 184 206 184 206 0.98 4 10 5.4e-06 0.00012 22.7 0.8 1 23 212 234 212 234 0.98 5 10 2.6e-05 0.00057 20.6 1.5 1 23 247 269 247 269 0.98 6 10 6.3e-07 1.4e-05 25.7 0.3 1 23 279 301 279 301 0.98 7 10 0.0073 0.16 12.9 2.7 2 20 307 325 306 328 0.94 8 10 0.00044 0.0095 16.7 2.1 1 23 334 356 334 356 0.95 9 10 3.6e-06 7.8e-05 23.3 3.5 1 23 362 384 362 384 0.98 10 10 7.1e-05 0.0015 19.2 1.3 1 23 390 413 390 413 0.96
Sequence Information
- Coding Sequence
- ATGGATGTCAAAAATTTATTTTGTCGTTTATGTGCAGAATTGCAACCAGATTATAATTTAATAGAAATAAGTGATGATAAAGCAGCAAATATGAATTTGGTCAGTAAAATAATGCAATGTTACAATGTGAAAATAACAAAAGATGATATTTTACCTCGACATGTTTGTTCGAATTGTTGTGATAAAGTGATCAATGCCTATGAATTTCATGAATTAGTACAAAAATCACAAAAATTTCTAATGAAACAAATGGTTCAAATTAAACAAGAAAATATCGATTCATCAAATACCTATAATGATTATTTGAATGTAAATGATTTTAGTAATGATATCTTAAACTCTACGAAACAAGAAATTAAAACAACAAAACGAAAATCCAAAAAATGGAAATGTAATGATTGTGATATATACTTGGTAAATGCAATGAAATATCGTGATCATTGCTTGAATGAACATAATCGAGAACCAGAATTTGCATGTCCAGATTGTACAAAAGTCTACAATAAATTATTTAGTTATTTTGCGCACATAAGATTACATAAAAAAAAATTTGTGTGTGATACTTGTAAAAAAGTATGTCGAGGTAATTCAGAATTACAACGTCATATGAAAACACATTCAACTGAAACTCCGTTCCCATGCATGGAATGTAATAAATCTTTCAAAACTGAGGAATATTTACTAAAACATCAAAACGTACATTTACCAGAAGAAATTAAAAAGAAAAAACCAAAGGTTTATTCATGCAATTTATGTTATAAAACATTTACAAAAGAAGAAAATTTAAACGCACATAAAGAAACTCATGGTCCTGAAGAAGAGCCTGCTAGAAATTTCGTATGTGATATATGTGGTAATAATTTCACTCAAAAAGGTAATCTAAAAGAACATATGATCACGCATAATGTGGTTTTATTGAAATGTGATAAATGTCCATCAGTATTTAAAAGCGAACGCAGTTTACGCAGACATCAAATATGTCATACGAATACTATGCCATACACATGTGATGTTTGTTTACGTCCATTTCGACATAAACATGCTCTAAAACGGCATGCTGGAATTCATACGAATCAACTACCTTTTGAATGCGAATACTGTCAAAAACGTTTTAGGCAAAAATCCTTTTTAAAGATACACTTAAGGCAACACACAGGGGAACGACCGTATTCCTGTCTAGAATGTAATCAAAGTTTTACAAATGATTCAAATTTCATAAAACATTTAAAAGGACGCCATGGGTTGACTAATGTTTCAGTAGCAAATCAGCGTCAGTATCCATTTGTAAATAAAACGGATGAATTAAAATATGCAATGGTGGCATGTTAA
- Protein Sequence
- MDVKNLFCRLCAELQPDYNLIEISDDKAANMNLVSKIMQCYNVKITKDDILPRHVCSNCCDKVINAYEFHELVQKSQKFLMKQMVQIKQENIDSSNTYNDYLNVNDFSNDILNSTKQEIKTTKRKSKKWKCNDCDIYLVNAMKYRDHCLNEHNREPEFACPDCTKVYNKLFSYFAHIRLHKKKFVCDTCKKVCRGNSELQRHMKTHSTETPFPCMECNKSFKTEEYLLKHQNVHLPEEIKKKKPKVYSCNLCYKTFTKEENLNAHKETHGPEEEPARNFVCDICGNNFTQKGNLKEHMITHNVVLLKCDKCPSVFKSERSLRRHQICHTNTMPYTCDVCLRPFRHKHALKRHAGIHTNQLPFECEYCQKRFRQKSFLKIHLRQHTGERPYSCLECNQSFTNDSNFIKHLKGRHGLTNVSVANQRQYPFVNKTDELKYAMVAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333155;
- 90% Identity
- iTF_00333155;
- 80% Identity
- -