Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:93124943-93132469[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.2 1.8e+02 3.3 1.8 3 23 152 169 150 169 0.88

2 13 0.00059 0.013 16.3 5.7 1 23 175 197 175 197 0.99

3 13 0.00011 0.0025 18.6 5.0 1 23 203 225 203 225 0.98

4 13 5.7e-05 0.0012 19.5 3.0 3 23 251 271 250 271 0.98

5 13 4.3e-06 9.4e-05 23.0 2.1 1 23 277 299 277 299 0.98

6 13 0.00057 0.012 16.4 3.4 1 23 305 327 305 327 0.99

7 13 0.0019 0.042 14.7 4.8 1 23 333 355 333 355 0.97

8 13 3.5e-06 7.5e-05 23.3 2.4 1 23 561 583 561 583 0.99

9 13 0.0015 0.032 15.1 2.9 3 21 591 609 589 610 0.94

10 13 0.0014 0.03 15.2 1.2 1 23 641 663 641 663 0.93

11 13 7e-05 0.0015 19.2 0.2 1 23 669 691 669 691 0.98

12 13 1.1 25 6.0 7.6 1 23 697 719 697 719 0.97

13 13 0.0058 0.12 13.2 2.5 1 23 725 747 725 747 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.2	1.8e+02	3.3	1.8	3	23	152	169	150	169	0.88
2	13	0.00059	0.013	16.3	5.7	1	23	175	197	175	197	0.99
3	13	0.00011	0.0025	18.6	5.0	1	23	203	225	203	225	0.98
4	13	5.7e-05	0.0012	19.5	3.0	3	23	251	271	250	271	0.98
5	13	4.3e-06	9.4e-05	23.0	2.1	1	23	277	299	277	299	0.98
6	13	0.00057	0.012	16.4	3.4	1	23	305	327	305	327	0.99
7	13	0.0019	0.042	14.7	4.8	1	23	333	355	333	355	0.97
8	13	3.5e-06	7.5e-05	23.3	2.4	1	23	561	583	561	583	0.99
9	13	0.0015	0.032	15.1	2.9	3	21	591	609	589	610	0.94
10	13	0.0014	0.03	15.2	1.2	1	23	641	663	641	663	0.93
11	13	7e-05	0.0015	19.2	0.2	1	23	669	691	669	691	0.98
12	13	1.1	25	6.0	7.6	1	23	697	719	697	719	0.97
13	13	0.0058	0.12	13.2	2.5	1	23	725	747	725	747	0.97

Sequence Information

Coding Sequence: ATGTATAATTTTGAAACAACTTGTCGAACATGTTCTTCGGATGGCGAATTACACTCAATATTCAATAACTATCCGTTTAATATAATTGAAATGTTAATAGAAATTGTTGATATTACGGTATTCGAAAATGATAATTATCCACAAAATATTTGCACAAATTGTTTGGATAAATTATATTCAGCGTACAATTTTAAACAGCAATGTCAAGAAACTCGAAAAAAATTTGAAGAGTATTTAAATAATTTAGAAATTAAAGACGAATTCGATAGCAATCACGAACAAAAGTATTTTATTGTGAACGAGGATATCGAATTGTCGAATAATTTCGATGAAGTTAAAAAGGAAAAAGTTGCTGTGAAAGAGGAGTTGGAATTGTCAAATAATTTCGTAGAAGATAAAAAGGAAAAAGTTATTAAACGGAAAAGGAAAAAAGTCGTAAGAAAAAAACAAATGTGTAAAATATGTAACCAAAGTGTGACAAAATTATTTGAACACATGCGATCTCATACGAATGAAAAACCGTACAAGTGTGAAACATGCTTTAAAGAATTTTCATTATGTTCGAATTATAATCGACATTTACGAAGTCATTCAGGTGAAAAACGATTTGCTTGTCATCTTTGTGATCGTAGATATACACAAAGTCATTCTTTAAAAGAACATGTTCGAACTCATGAATTGGATCCAAACTGCTCGAAAGACGATTCGAAATTATCGAATCGTGTAAGACCGCCAAGCCAACCGCTCTTATGTAGTATTTGTGGTAAATGTTTTACACATCGGGCAGCTTTCAATGTGCATCAAAATGTTCACACCGGTGCACGACCTCATAAATGTAAAATTTGTGAAAAATCATTTTCACAAAGTGCTGCGCTAAGTACACATCAACTAACGCACTCCGGTGAAAAACGTTATAAATGTTCGTTTTGTGAAAAACAATTTGCTGTGAAGTGTTCGTTAACGATACATGTGCGTACCCATACGGGGGAGAAACCATTTATTTGTTCAATCTGTTGTAAAGGATTTTATGATTCGAGTAATTTGAAGAGACATAAGAAAAAACATTTATTAACGGAAAATGATGGACAAATCATAAAAAAGGAAAACACGCTTGAATTGCCTTTAAAGGTATTCGAAAATGATAATTATCCACAAAATATTTGCATAAATTGTTTGGATAAATTATATTCAGCGTACAATTTCAAACAACAATGTCAAGAAACTCGAAAAAAGTTTGAAGAGTATTTAAATAATTTGGATACTAAAGATAATTTCGATAGCATTCACGAAGAAAAGTATTTTATTGTAAAAGAGGATAACGAATTGTCGAATTTCGTAGAAGTTAAACAGGAAAAAGTTTTTGCGAACGAGGATATCGAATCGTCGAATAATTACGAAAAAAATGAATTTCTGATTGATAACAGCTACGAAGAAGGAATAGAAAATGAATCATCGAATTACTGCAAAGACGAACCAAAAGAAGGTGATAATTCCAGCGAAGAAAATTATTTCAAAGAAGTCGAATATGAAGAATCATCGAATCACAGCGAAGACGAATCAAAAATAAGCATCAAAAAAATACGAAACAAAAATGTACCGCGAAGTGGAACTTGTGAAATCTGTAACCAAACTGTAACGAAATTATACGAACACATGCGAAAACATACGAAAGAAAAACCGTACAAATGCGAAACTTGTGACAAACGATTTTCGTTGAGTTCAAACTATAGTCGACATTTACGGATTCATCGCGGTGAAAAACGTTTTGGTTGTGACATCTGTCAGCGCAGTTTTACGCAAAAGCATACTTTACGAGCGCATCGATGTCTGGGTGAGCAACGGAAACCTCGAACACCTACAGAATACAAACCGAGAGGGACGGGTTTAGTTACTGTTACGAATGAAGAAGGAAAAAAACGATTTTTATGTAGCTTTTGTGGGAAAAGTTTCGCACATCGTCAAGGATTGGTTACGCACAGGGTCGTGCACACCGGCGAGAGACCTTATAAATGTGCTGTTTGTGAGAAAACGTTTGCATACAGTGCTACATTACGGGTTCACGAACTGACTCACACCGATGAAAAACCTTTTAAATGTTCTTTTTGTGAGAAAATGTTTAAAGTTCGATCGCATTGTTTGAGTCATGAAAAAAGTCACACCGGAGAGAAACAATATAAATGTTCGTTTTGCGAACGAGAATTTATACATCGTAGCACGTGGAAAAGTCATGAATTAATTCACACGGGAGAGAAACCATACGAATGCCGTATCTCAAAATCGTCCAATTTTGCCGAGGATGCTAGCAGTCGTCATCCGATTTAG
Protein Sequence: MYNFETTCRTCSSDGELHSIFNNYPFNIIEMLIEIVDITVFENDNYPQNICTNCLDKLYSAYNFKQQCQETRKKFEEYLNNLEIKDEFDSNHEQKYFIVNEDIELSNNFDEVKKEKVAVKEELELSNNFVEDKKEKVIKRKRKKVVRKKQMCKICNQSVTKLFEHMRSHTNEKPYKCETCFKEFSLCSNYNRHLRSHSGEKRFACHLCDRRYTQSHSLKEHVRTHELDPNCSKDDSKLSNRVRPPSQPLLCSICGKCFTHRAAFNVHQNVHTGARPHKCKICEKSFSQSAALSTHQLTHSGEKRYKCSFCEKQFAVKCSLTIHVRTHTGEKPFICSICCKGFYDSSNLKRHKKKHLLTENDGQIIKKENTLELPLKVFENDNYPQNICINCLDKLYSAYNFKQQCQETRKKFEEYLNNLDTKDNFDSIHEEKYFIVKEDNELSNFVEVKQEKVFANEDIESSNNYEKNEFLIDNSYEEGIENESSNYCKDEPKEGDNSSEENYFKEVEYEESSNHSEDESKISIKKIRNKNVPRSGTCEICNQTVTKLYEHMRKHTKEKPYKCETCDKRFSLSSNYSRHLRIHRGEKRFGCDICQRSFTQKHTLRAHRCLGEQRKPRTPTEYKPRGTGLVTVTNEEGKKRFLCSFCGKSFAHRQGLVTHRVVHTGERPYKCAVCEKTFAYSATLRVHELTHTDEKPFKCSFCEKMFKVRSHCLSHEKSHTGEKQYKCSFCEREFIHRSTWKSHELIHTGEKPYECRISKSSNFAEDASSRHPI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -