Ccar019047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997754.1:102634805-102647088[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 4.4e-05 0.00095 19.9 1.3 1 23 175 197 175 197 0.96
2 11 0.00054 0.012 16.5 0.3 1 20 203 222 203 223 0.96
3 11 0.0057 0.12 13.2 2.0 1 23 232 254 232 254 0.97
4 11 0.0017 0.038 14.8 0.1 2 23 261 282 260 282 0.97
5 11 0.002 0.044 14.6 9.8 1 23 288 310 288 311 0.95
6 11 0.00069 0.015 16.1 0.3 1 23 330 352 330 352 0.98
7 11 6.6e-05 0.0014 19.3 0.6 1 23 358 380 358 380 0.95
8 11 0.0031 0.067 14.1 2.9 1 23 386 408 386 408 0.97
9 11 2.9e-05 0.00063 20.4 5.6 1 23 414 436 414 436 0.99
10 11 0.0011 0.024 15.5 0.9 1 23 442 464 442 464 0.98
11 11 4.5e-05 0.00096 19.9 1.3 1 23 470 493 470 493 0.96

Sequence Information

Coding Sequence
ATGTTATTATTTGATAAAATATGTCGTACCTGTGGCCAAGAAAATGATGATTTAAAAAATATATTTGATGTTACTGATGTTGATTGTCCATCCATGATAGTGGCAATTGCTAATATACAGGTGGATAAAAATGATAATTTACCACAAAATATTTGTGAAAAATGTATAAACTCCATTAAACATGTTTATGTATTTAAATTACAATGTGAAAAATTACATATTCAATATTTATCAAATAGCTATCAATTTATCCTCATTAAAGATGATGGGCAAGATGAGAACGAATTAAATAAAGATGATAGTTATCAATTTATACTTATTAATGAAGAAGAAGATAAGAAATGTTTGACAGACGAAAATGATTTACAAATTCAATATTTATTTAATAAAGATAACGATTTAATCGATAAAAATGATTCAACTAAAGAAATTGAAGAAGAAAAAATATTTATTAAAGAAGACTATGCTATTGATGAAGAAGAATTAAAAGATGATGATTTAAAAGAAAATGAAATGACAAAATATGAATGTAAAACATGTAATGAAAGTTTCACAACGCCAAAAAATCTTAAAATTCATGAATTTTCACACACAAAACAAAAACCGTTTAAATGTAAAGAATGTAATGCAACTTTCGCACAATCATCAAGCGTAAAAAGACACCTTGCATGTGTACACACAGATATACGACCGCATGTATGTTCCATATGTAATAAAAGTTTTAAATTAAAGAAAATTTTAAAAGGTCACATGAATGTACATACAAAAGAGAAACAAGTTGAATGTAACGTATGTTTGGCGAAATTCACACTACCAGCAAATTTACGTCGGCATATGACAATGCATACGGGAATAGGTGAACATAAATGTGATATATGTAATAAAATTTTTACTCGTTATTGTAATTTACAATTACATATACGCCATCATCATTTTTTAAATAATAAAGGTGATAAAATTAAAATACGAAAAAAAAATGACAAAGAATATGAATGTGATGAATGTGGTAAAATATTAAAAACTAAAAAAGGCTTATATGAACATCAATTAAATCATGCAAATATTAAAAATTTTTTATGTTCATTATGTGGAAAAGAATTTGTATCGTATTCAAATTATTTATCACATATGAAAGTACATTCAGGTGCAAAACCATACAAATGTGATTTATGTGACAAAACATTCTCACAACTTGGTTTGTTAAAATGTCATAAAAATGTGCATACTGGCGAACGTCCTTATACATGCAAATATTGTTCAAAATCGTTTAAACAAGATTCACATTTAAGATATCATTTACGTATACATGAGAATTTAAAACCATACGAATGTTCATTTTGTTTGAAAAAGTTTACAGTAAAAGGTACTTTAACGGTACATGAACGTATTCATACGGGAGAAACACCTTATGTATGTACAATCTGTTCGAAAGGTTTTTATGATTCAAGCAGTTTAAAGCGACATAAAGCCAAACAACATAAGGCAAGGAAATGTGATGCATATTATCGACGTAAAGCATTATTACAAAGTGATCACTTCGAATTGCCAACGCAAAGTGAAATATTACAACGCCATAAAGAACATTTGACAAGTGTATTAAATGAATATATTGGCAAACCAATTCAATTAGATATTGGTGTAACACCACCATTAACTGGTGCTAAGGACGATTTATGGGTATCACCAAGTGATTTATTAATCCCATATGTACGATTGAAACCACCATTAACTAACAAATATGTCAGAGCATTAACACATGCTGGTATTTTAGAAATGGGCAGAGAAGTACAAGAAAAATATCAAAATGAAATATCAGATCGTGTTGATGTTGAAATGAAATTGTTAGCAGATAAATTAAATTTTGTTTGCCGTAAAGAAATTACGAAGGCTGTATTTTCTGAAAAACTTAATGGCGAAAAAAAATTAAAAATGGAATTAAACCGATTAGAACATGAATATAAAAATCAATTGCAGGAAGAATTAAATAAATTGCGGTCTAAATTGTTGGATGAGGAGGAACAAAAACTTGAAAATCAAAAACAAATGTTACTGGAAGAAGGAAAACAAAGAAAAAAAGCTGCAATTAATGAAACAGCAAACTATTTATTAAAACGATACCAACATTCATTTGAAGTACAAGCACAAAAGCATACTAAAAACTTAGCACAAGCAATCAGAATTGAAGAAGAAAAAATTGCAAAAGCTTTAAAGAATGCAAATGCAGATAAATTAGAAGCATTACGTATATTAAGGCATGATTTAGAATGTCGTAATATGGCAAATTTGATGTACATCTTAACGGCTGAACGTAATCGCTGCGAAAATGAAAAACAAAAAATTTACAATGAATATAAAATATTAATCGATGAAATGATATCAAAAGCATTGGATTTATATAAAGATATTTTAGATTTAAAATCATCATCCAATAAAATGCAAATTAAATTACATAAATATAACTCATTTATTGAACAAATACTTTGTGAATTTCAATATTTTATTAATTATACATTTGAATCAACTCCTTCACAATGCGAATATTTGTTAAATTTACATAAATTTGTTCGACATCACTTACAAAAAGATATGTCTTCATTACCAAAAGTAACTGCGAAACTCTCTGAGAAGTCGATACATAAAATAACACCAAGTATATTAAAATTAACTGAAAGAAGAGATAAAGAATGGTTGTTATCATCGAGGTTCAATAACAAAATGAATACTTCTAATGGGGATGATAATAAATATGCAATTAAAACACTGGATGAAGACTCGCCATTACCAAGTCAACAAACATTGAGTAGTAAAACTGAGTTAAGCCATTTATTGTATAATAAATATGTTTACGTACGTGAAGATTTTCGCAATAGAAAATCAAATGATCTTCCCTCGAATGAAGATAATTTATGGAAAGATCAATCGGACAGTAGTGAATCTATCGGTGAAGTAATAAGCCTGCAAAACAAAACACATCCAACATCTTCAACTGTCCATTTTCATTTAAGACCAACTGATGAAGATAAAAATGGTGAATTATCACGGAGTACCTCTATGCCAATATTTGAAAAGCAAACGTTTATAACTACATCCAAAGAAACCTCATTTAAGGCGAATACTTCTCGTGGTACATTTAAGAAAAGAACAGATGAATATTTGGAAACAGTAAATGTACCACTTAAATTATCTGCTGTTGACATGGTCTCTGAACATACGAATAAACATTCTTCGAAATTAATGGTTACTAAAAATTCATTTATTTTACATCAACGTCATAAATATTCTGAATCTGTACCACAAGATCTGAATGAGTCTGATGAAGCCATTGAAATGAATGATAATAAAGACAATTTAGTTACCACACCTTTCACCGAAACAAGTTTAGTATCATTTTTAATTGTGCCAAACAAAGATGACGATTTAGCAAAGTCCAAATTGTCACTAGTACGTGACTCTGTTGAATTGATCAGACAGAAAAGTGCTGTTAAATCAAAAACTGAAAACCCTGATATACCATCTCCAACACCAAAAAACAAACCAAAGCCAACCACGTCAGCAAGTTCAATATTATTTAATTTACTTCCAATTGATGAAGTGAGATCGTATAAATCAACAAACCTTGTTGAATTGGAACCAAGAAATACAACATCAAAAAGAAGGCGAAAATCGAATGACAATGGAGATACTCCTATTGCAACAATGCCATCAAAATTATCATTAGCAACCGATTCTCTCGAATTAATGAAACGTAAAAGTTCTGCAAAATTACCAAAAAGTGGGACAAAGATCAAACCAAAGACAACAAAAGACGATAATAAAAGTTTAGTATTGATGACTCAGAATCTTGCTAGTGTTGATGAGCAATCAGTTGAAAATTCTTCAACTAGTTCTGATCCTACCAATACTAACAAATACGAAGATATGATGAATTTGTCTGATGCAAATAAAATAAAAACTAAAAAATACAAAACATCACGTGTGGCGATTATTGAAGATCCTGTGAATGTTATACATCCGGATTCAATGTCAAATTCAGGAGCAACCAAACATTTGGCTGATTTTAATGCAATGAATCCATTCTCATTAAATCATTTAGATGTTATTGATAAACAAGATGTTAACGAACCGAATAAATATTATTATCCATTACGATTACAGCAAAAACAACAACAAGAACTTCATCAATCTACATCAAATAATTCGAATCGATTAACCAGGAAAAATAAGACTAAAAATAATTCTAAAAAAAGTAGCAGTAATATTGTTACTGGTATTACTGTAGATAATACTAATTTAACACCACAAGAATTTATTGAAACAAGAAATGAATCTTTGAAAAAATTTCAATAA
Protein Sequence
MLLFDKICRTCGQENDDLKNIFDVTDVDCPSMIVAIANIQVDKNDNLPQNICEKCINSIKHVYVFKLQCEKLHIQYLSNSYQFILIKDDGQDENELNKDDSYQFILINEEEDKKCLTDENDLQIQYLFNKDNDLIDKNDSTKEIEEEKIFIKEDYAIDEEELKDDDLKENEMTKYECKTCNESFTTPKNLKIHEFSHTKQKPFKCKECNATFAQSSSVKRHLACVHTDIRPHVCSICNKSFKLKKILKGHMNVHTKEKQVECNVCLAKFTLPANLRRHMTMHTGIGEHKCDICNKIFTRYCNLQLHIRHHHFLNNKGDKIKIRKKNDKEYECDECGKILKTKKGLYEHQLNHANIKNFLCSLCGKEFVSYSNYLSHMKVHSGAKPYKCDLCDKTFSQLGLLKCHKNVHTGERPYTCKYCSKSFKQDSHLRYHLRIHENLKPYECSFCLKKFTVKGTLTVHERIHTGETPYVCTICSKGFYDSSSLKRHKAKQHKARKCDAYYRRKALLQSDHFELPTQSEILQRHKEHLTSVLNEYIGKPIQLDIGVTPPLTGAKDDLWVSPSDLLIPYVRLKPPLTNKYVRALTHAGILEMGREVQEKYQNEISDRVDVEMKLLADKLNFVCRKEITKAVFSEKLNGEKKLKMELNRLEHEYKNQLQEELNKLRSKLLDEEEQKLENQKQMLLEEGKQRKKAAINETANYLLKRYQHSFEVQAQKHTKNLAQAIRIEEEKIAKALKNANADKLEALRILRHDLECRNMANLMYILTAERNRCENEKQKIYNEYKILIDEMISKALDLYKDILDLKSSSNKMQIKLHKYNSFIEQILCEFQYFINYTFESTPSQCEYLLNLHKFVRHHLQKDMSSLPKVTAKLSEKSIHKITPSILKLTERRDKEWLLSSRFNNKMNTSNGDDNKYAIKTLDEDSPLPSQQTLSSKTELSHLLYNKYVYVREDFRNRKSNDLPSNEDNLWKDQSDSSESIGEVISLQNKTHPTSSTVHFHLRPTDEDKNGELSRSTSMPIFEKQTFITTSKETSFKANTSRGTFKKRTDEYLETVNVPLKLSAVDMVSEHTNKHSSKLMVTKNSFILHQRHKYSESVPQDLNESDEAIEMNDNKDNLVTTPFTETSLVSFLIVPNKDDDLAKSKLSLVRDSVELIRQKSAVKSKTENPDIPSPTPKNKPKPTTSASSILFNLLPIDEVRSYKSTNLVELEPRNTTSKRRRKSNDNGDTPIATMPSKLSLATDSLELMKRKSSAKLPKSGTKIKPKTTKDDNKSLVLMTQNLASVDEQSVENSSTSSDPTNTNKYEDMMNLSDANKIKTKKYKTSRVAIIEDPVNVIHPDSMSNSGATKHLADFNAMNPFSLNHLDVIDKQDVNEPNKYYYPLRLQQKQQQELHQSTSNNSNRLTRKNKTKNNSKKSSSNIVTGITVDNTNLTPQEFIETRNESLKKFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-