Ccar010233.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- CIA30
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:33755820-33770667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0024 0.052 14.4 0.5 1 23 366 388 366 388 0.98 2 9 0.00017 0.0037 18.0 1.7 1 23 394 416 394 416 0.97 3 9 0.0021 0.044 14.6 3.9 1 23 431 453 431 453 0.98 4 9 3e-06 6.5e-05 23.5 3.2 1 23 475 497 475 497 0.98 5 9 8.6e-05 0.0018 19.0 0.1 1 23 503 525 503 525 0.94 6 9 1.3e-05 0.00029 21.5 0.2 1 23 532 554 532 554 0.98 7 9 7.5e-05 0.0016 19.1 0.3 1 23 560 583 560 583 0.97 8 9 9.1e-05 0.002 18.9 0.0 1 23 591 613 591 613 0.98 9 9 0.00052 0.011 16.5 0.6 1 23 619 641 619 641 0.95
Sequence Information
- Coding Sequence
- ATGAATGTCATTTTAAAAAGAATTCATTGCAATGCTGTGTTGAGAAATATTATTATTAATTTTAAATTAGAAACAATTAGTTGTAATAAAATACATTTAACAAATGTCGATAATTTATTTTGGGAAAGTGATAAAAAAGGAGGTTATAACCGACAAAATAAGAATATTTCTAAAACGTTATTAATTAAAAATGGATTTAAAGAACTCAAAGATGAATTGGTATTATGGAAAAATGAAGTTAAAGAAAAGTTTTTATTAGACCCGGTTATGGTTTGTAGACCAGGTGAAACAGACGTAGTATGGCGCTATGGTAATAAAGAGTCATTATCACAATGGATTACAACCAGTGATAGTGATCATAATGAAGGTAAAAGTTCATGTTCACTAAACTTAAATCGCCAGGGACGTGGCGTATTTTCTGGTATAATAAACACAGAAGTGCCTAAAGATGGACGCACTAAAAAATCTGGATACTGTAATATGCGATCAATTCGTGCTCGAAAATCATTTAAACGTGAAGCATATTTGGATTGGCACATGTATAATAAATTAGTGTTAAAGATACGTGGTGATGGACGACCGTATTTATTAAATATAGCATCCGAAGGCTATTACGATATATGGTGGAATGACATTTATCATTATATATTATTTACTCGAGGTGGTCCATATTGGCAAATTGCTAAGATACCGTTTTCAAAATTCTTTTTATCATCGAAAGGTCGTGTACAAGATCGACAATACCCAATAAGATTAGACCGTGTGACATCATTTGGTATATCAGCCGGGGATCGGATTTCTTTCAATGATGGTTTACCAGATAGTTTATGTGATAATTGTTATGAAAAAATTGAAGATTTTCATAAATTTAAACAGCTTTGTGTCGAATCAAATGCTAAATTACACGAGATGCAACATAAAACAATGCCATCTTCAAATGAAGACGTGAATTTAAACACCCGCAAATGTGAATATAAGCCTTTAAATAAACTAGAGAAAACTGATAATAAAAAATCAATTTTTTTCAAAGAAGATTGTTTCGTTAATTATCAAGATAATACATACAAATGTCGTATTAAGACCGATGGACAATCATATGTATGTTCAATTTGTTCCAATACCTTAGATTCAAAACAGTCTTTAAAAAAGCACATCGTAACTCACCTTAAAACGAAACTTTATTTTTGTGATAAATGTGGAAAAGGATATGTCGAGGAGAGAAGTCTTATCAAGCATATGCGACATCATACAATTAAATCTAAGGACAAAAGTTCTACATCAGAAAATAGACACGAATGTTTAGTTTGTGGACAAAGATTCGGCGGACGTTTTCACTTTAATATGCATATGAGAACACACATTGTTAAAAAATCACATATTACAGGCTCGACAAAAAATCAATCAGAAAATCTTGGTCCACCATATAATTGTACTCGTTGTAATAAAACGTTTAAAAGTAAAATGAATTTAATACAACACATACGGAGGCATAATGGTGAAAAACCTTTTGTTTGTGCTATATGTGGAAAAGCATTTGTGACGTCTAGTGAGCTTAAAGGACATGATCGAAAACATAAAGGAATTAAATCCAAACATGTTTGTGAAATTTGTGGCAAAGATTTTGCCGCATCAAATGCGCTCCAAATACATATGCGTAAACATACTGGAGAAAAGCCATTTTCATGTGAAGAATGTGGACGATCTTATAAAGAAATTGGAACATTACGAAAACATACTAGGATCGCACACAAAAAACATGGAAATAAACAATTTATATGCGAGATTTGTGGACGTGAAACAATATCTCCAAGTGCTCTGGTGATACATATACGTATTCATACAGGTGAAAAACCGTTTTTATGCGCAGAATGTGGACGTGAATTTATATCACAAGGGAGACTTAACAAGCATAAAAAATCACATAAAGATGTCTTTTTATAA
- Protein Sequence
- MNVILKRIHCNAVLRNIIINFKLETISCNKIHLTNVDNLFWESDKKGGYNRQNKNISKTLLIKNGFKELKDELVLWKNEVKEKFLLDPVMVCRPGETDVVWRYGNKESLSQWITTSDSDHNEGKSSCSLNLNRQGRGVFSGIINTEVPKDGRTKKSGYCNMRSIRARKSFKREAYLDWHMYNKLVLKIRGDGRPYLLNIASEGYYDIWWNDIYHYILFTRGGPYWQIAKIPFSKFFLSSKGRVQDRQYPIRLDRVTSFGISAGDRISFNDGLPDSLCDNCYEKIEDFHKFKQLCVESNAKLHEMQHKTMPSSNEDVNLNTRKCEYKPLNKLEKTDNKKSIFFKEDCFVNYQDNTYKCRIKTDGQSYVCSICSNTLDSKQSLKKHIVTHLKTKLYFCDKCGKGYVEERSLIKHMRHHTIKSKDKSSTSENRHECLVCGQRFGGRFHFNMHMRTHIVKKSHITGSTKNQSENLGPPYNCTRCNKTFKSKMNLIQHIRRHNGEKPFVCAICGKAFVTSSELKGHDRKHKGIKSKHVCEICGKDFAASNALQIHMRKHTGEKPFSCEECGRSYKEIGTLRKHTRIAHKKHGNKQFICEICGRETISPSALVIHIRIHTGEKPFLCAECGREFISQGRLNKHKKSHKDVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -