Ccar021197.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- ZNF219
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:2146325-2148279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.002 0.043 14.7 0.6 2 23 194 215 193 215 0.96 2 12 0.00096 0.021 15.7 2.3 1 23 223 245 223 245 0.97 3 12 0.023 0.49 11.3 1.9 1 23 251 274 251 274 0.88 4 12 0.022 0.48 11.4 2.5 2 23 280 301 279 301 0.97 5 12 1.1e-05 0.00025 21.7 0.8 1 23 306 328 306 328 0.98 6 12 1.5e-05 0.00033 21.3 2.0 1 23 334 357 334 357 0.97 7 12 0.026 0.57 11.1 0.3 3 23 366 385 365 385 0.97 8 12 0.014 0.31 12.0 0.3 1 23 391 414 391 414 0.93 9 12 0.0004 0.0086 16.9 0.1 1 23 423 446 423 446 0.95 10 12 5.3e-06 0.00011 22.8 1.3 2 23 453 475 452 475 0.96 11 12 0.0012 0.027 15.3 5.7 3 23 483 503 481 503 0.96 12 12 3.7e-05 0.00079 20.1 0.5 1 23 509 531 509 531 0.98
Sequence Information
- Coding Sequence
- ATGAACAAATTAATTGAAATTAAAGATTTCAGTACAATTTGTCGTATTTGTTTATTTATTAATGATAAAATGCTTTCAATTACAACATTAGAAATAATAAATATGCTTGAAGCGTGTGCTTCAATCGAAGTATTAAAGGGCAATAATTATCAAAAAAGCATCGAAGAAAAATTACCCCAACAAATTTGTGATAAATGCTATTTACAATTAAAAAATGCATACGAATTCCAAGCGCAATGTCGAAATTCAATAAAAACTCTTTATAATATTCTCTTGAAACATAACCCGCACACACCAATGAGTTCCAACGAAGAATTTAATGGTACGAGTGTTCAAATATTAGAAAATGTTTGTAACTCTTTAACAAGTTTAGAAAATTTCGATAACATACCAAATTCACCACAATCAACTTTAGAATTCTATGACGATGATGAAAACTCGAAATCATCTTCGAATAGTATTAAATTAGAGAATGGAGAATTTCATGAAGAAGAGGAAATTAAAGAAAATGAAACAAATCCATCCCGACAAAAATCGGTTGCGGATTTACTAATAAAAAAATATAATATCTACGGATTAACATGTAATATTTGTCAGAAGGATTTAAGTAATCGATTCTCAATGTTACGCCACATGGAAGTACACGATCAAAATCGATCCTTAAAATATCATTGTAAGACTTGTAACAAAGGATTCTATGCAGCGGAAAATTTAAAAAAACATGAGATTCGTCATTTAGGTAAAACAAAGTACCAATGTGATAAATGTCCGAAGCGATTTTATGTGTTAAGTGCTTTGGGGGTGCATTGTAAGTCTAGTCACAAAGCGAAACCAATCACTTGCACTCAATGCTCTCAACAATTCTATCATCAATTACAAATCGAACAACACATGCAAACTCATGAAGAGAAGAAATTTGTTTGTGAAGATTGTGGAAAAATTTTCCCAACACGTAATCGTTTAACAAAACATAAAAAAATCCATTCGGATGAACGACCCTACAAATGTCCAATATGTACGAGAGGTTTTAAACAGAAATTCGATTTAACAAATCACGTTAAATATCGTCATGAAGAATCCGATCGTCGTGAAATATGTAATATTTGTGGGAAATTATTACATCCGGGTAGTTTACGTGCACACTTAGAGACACATAATACGGATACAATTTACAAGTGTGAACAATGTGGTAAGATTTATGCGAATCGAATTATTTTAGGTAAACATATTAATCAAAAACATAAAATGATTGATTTAATGAAGAAATATTTATGTAAAGTATGTAATAAAGCGTTGGAAAGTGATGAGAATCTTAAACGGCATATGTTAGTTGTGCATGCGCGTTATAAACGTAAAGAATGTCATATTTGTGGTAAAACGTATAAATCGAAAAAGGGTTTAAATGTACATATACAAAGTGCACATATGGATGTAAGGCCACATTTATGTCAGACATGTAATAAGGCATTTCATACAAAAGCACGTTTACAGAATCATATGAGATCTCATACCGGGGAACGGCCGTTTTCGTGTTCAATATGTGGTAAGGCGTTTGGATTTAAACAAGTGTTAAAAACACATATGAACATTCATTCAAAATAA
- Protein Sequence
- MNKLIEIKDFSTICRICLFINDKMLSITTLEIINMLEACASIEVLKGNNYQKSIEEKLPQQICDKCYLQLKNAYEFQAQCRNSIKTLYNILLKHNPHTPMSSNEEFNGTSVQILENVCNSLTSLENFDNIPNSPQSTLEFYDDDENSKSSSNSIKLENGEFHEEEEIKENETNPSRQKSVADLLIKKYNIYGLTCNICQKDLSNRFSMLRHMEVHDQNRSLKYHCKTCNKGFYAAENLKKHEIRHLGKTKYQCDKCPKRFYVLSALGVHCKSSHKAKPITCTQCSQQFYHQLQIEQHMQTHEEKKFVCEDCGKIFPTRNRLTKHKKIHSDERPYKCPICTRGFKQKFDLTNHVKYRHEESDRREICNICGKLLHPGSLRAHLETHNTDTIYKCEQCGKIYANRIILGKHINQKHKMIDLMKKYLCKVCNKALESDENLKRHMLVVHARYKRKECHICGKTYKSKKGLNVHIQSAHMDVRPHLCQTCNKAFHTKARLQNHMRSHTGERPFSCSICGKAFGFKQVLKTHMNIHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -