Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997758.1:8588848-8591091[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00018 0.0039 17.9 0.6 2 23 276 297 275 297 0.96

2 10 7.1e-06 0.00015 22.4 0.1 2 23 302 323 301 323 0.97

3 10 1.8e-05 0.00039 21.1 0.2 3 23 330 350 328 350 0.96

4 10 0.00046 0.0099 16.7 1.7 1 23 354 376 354 376 0.97

5 10 0.0016 0.035 15.0 2.3 2 23 381 402 380 402 0.97

6 10 0.00024 0.0053 17.5 1.2 2 23 407 428 406 428 0.96

7 10 0.00095 0.021 15.7 0.6 1 21 433 453 433 454 0.94

8 10 2.9e-05 0.00063 20.4 1.6 2 23 619 640 618 640 0.96

9 10 0.00023 0.0049 17.6 0.6 2 23 645 666 644 666 0.96

10 10 6.1e-05 0.0013 19.4 0.1 3 23 673 693 671 693 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00018	0.0039	17.9	0.6	2	23	276	297	275	297	0.96
2	10	7.1e-06	0.00015	22.4	0.1	2	23	302	323	301	323	0.97
3	10	1.8e-05	0.00039	21.1	0.2	3	23	330	350	328	350	0.96
4	10	0.00046	0.0099	16.7	1.7	1	23	354	376	354	376	0.97
5	10	0.0016	0.035	15.0	2.3	2	23	381	402	380	402	0.97
6	10	0.00024	0.0053	17.5	1.2	2	23	407	428	406	428	0.96
7	10	0.00095	0.021	15.7	0.6	1	21	433	453	433	454	0.94
8	10	2.9e-05	0.00063	20.4	1.6	2	23	619	640	618	640	0.96
9	10	0.00023	0.0049	17.6	0.6	2	23	645	666	644	666	0.96
10	10	6.1e-05	0.0013	19.4	0.1	3	23	673	693	671	693	0.96

Sequence Information

Coding Sequence: ATGAGTGGAAGAAGATACGGTGTGTACTGCACAGTACATGGTTGTAAAAATTCAACAATACCAAAAAAAGTTAGTATGTTTCGATTTCCCAAGGATCTTGAAAGAGCAAGGGAATGGTTATTAAAATGTAATCGTACCGATCTCATGAATAAAAGTGGATTGCAATTGCATAATAATTATAGGCTATGTGGTACACATTTTGAGAATAAAATGTTTTTAAACGATTTAAAAAACAGATTGCAACCTTTAGCTGTACCCACTATTTTTCCTACATTGGAGGGTTCATCAAATACTCCAGTTAAAGAATATCCAGATTCAGTGGATTTTAATGAAGATCTTGAAGAAAAACCAGATGTTCCAGCTCTAACAGTTAAGCCCGGAGCCGAGGAAAGAAGAGACAATCATTGGTTTATCAGTGAAGAACTTATTGAACTTGAAACCGACTTAATTAAAAACGAAATATTTGAAGAAAATGATTTAATTGAACATGAACAAATAAAAGAAGAGATTCTAGATGAAAATATCACAACGGAATATGAAAGGGCACTTTTAAATGAACATATTAAATTGGAACAAAAATTACATACAGAAATAATAATTAAAGATGAAATATCAGATGAAAATGTTTTTGAAAAATACACAATTAAAAACGAAATCCCAGAAGAAAATGGTCCAATGAAGTGTGAAAAAACACTTTTAAAGAAGCAGTTGAGGGATAAATATGAACATATTCAATTTGAACAAAAATTCATTCCAGAAGTAAATGAAATAAAATATGAAAATGTTGTAGAAAATCAACAAACTCTTACAGAAGAAAAATGTCTTACATGTGATGTTTGTAATCAAAAATTTATTCGAAAAGGCGATTTAAAGACACATAAACTTATTCACACGGGAGAAATTTCATGTAAAGATTGTGGTATGAATTTTATCCGACAAAACGATTTAATTGCACATCAACGAATTCACACTGGCAAACTTTTAGCATGTGAAGTTTGTGATAGAACATTTTCCCGAAAAGGCGATTTAACGGTACATAAACTCGTTCACACTGGAAAATTTTCGTGTAAAGTTTGTGATAGGAAATATGTTCGAAAAAATGATTTAGATAATCATAAACGTGAACACACTGGAGAACTTTCATGTAAACGTTGTTCCAGTACGTTTATTCGGAAAAACGATTTGATTACACATCAACGTAAACACACTAGAGAACTTTATTGTGAAATTTGTAAAGTAACGTTTATTCGAAAAAACTATTTTATTAAACATCAACGCTTACACACAAAAGAAATGTTTTCCTGTAAAGTTTGTGCTAAAAAATATTTTCGGAAGAGTGATTTAAAAGTACATATTGACACACGAGAGTGCAGGGAAAGAAAAGGCAGACATGATCGAGAACACATTATACCTGAAACCGACATAATTAGAAACGAAATATTTGAAGAAAATGATTTAATTGAACAGGAACAAATTAAAGAAGAGATTCTAGATGAAAATGCCACAATGGAATATGAAAAGACAATTTTAAATGAACATATTAAACTGGAACAAAAATTACATACAGAAATAATAATTAAAGATGAAATATTCGACGAAAATGCTTTAAAAAATCAAGAAAACTACTCAATTAAAAACGAAATATTTGAAGAAAATGATTTGATGGAACATGAACAAATTAAAAACGAAATTCCAGAAGAAAGTGATTCAATGAAGTGTGAGAAAACACATTTAAAGAAACAGTTGGAGGATAAATACGAACATATTCAATTTGAAGAAAAGTTCATTCCAGAAGTAATGAAAGATGAAAATGTTGTAGAAAATCAACAGGCACTTACTGAAAAAAATCCTCTTACATGTAATGTTTGTAATAGAAAATTTACTCGGAAAGGCGATTTAAAGACACATAAACTTATTCACACGGGAGAAATTTCTTGTAAAGATTGTGGTGAGAACTTTTACCGCCAAATCGATTTAATTACACATAAACGCTTTCACACTGGAGAATTTTTAGCATGTGATGTTTGTGGTAGAAAATATATTCGGAAAGGCGATTTAACGGTACATAAACGCATTCACACTAAGAAATTATTGTGA
Protein Sequence: MSGRRYGVYCTVHGCKNSTIPKKVSMFRFPKDLERAREWLLKCNRTDLMNKSGLQLHNNYRLCGTHFENKMFLNDLKNRLQPLAVPTIFPTLEGSSNTPVKEYPDSVDFNEDLEEKPDVPALTVKPGAEERRDNHWFISEELIELETDLIKNEIFEENDLIEHEQIKEEILDENITTEYERALLNEHIKLEQKLHTEIIIKDEISDENVFEKYTIKNEIPEENGPMKCEKTLLKKQLRDKYEHIQFEQKFIPEVNEIKYENVVENQQTLTEEKCLTCDVCNQKFIRKGDLKTHKLIHTGEISCKDCGMNFIRQNDLIAHQRIHTGKLLACEVCDRTFSRKGDLTVHKLVHTGKFSCKVCDRKYVRKNDLDNHKREHTGELSCKRCSSTFIRKNDLITHQRKHTRELYCEICKVTFIRKNYFIKHQRLHTKEMFSCKVCAKKYFRKSDLKVHIDTRECRERKGRHDREHIIPETDIIRNEIFEENDLIEQEQIKEEILDENATMEYEKTILNEHIKLEQKLHTEIIIKDEIFDENALKNQENYSIKNEIFEENDLMEHEQIKNEIPEESDSMKCEKTHLKKQLEDKYEHIQFEEKFIPEVMKDENVVENQQALTEKNPLTCNVCNRKFTRKGDLKTHKLIHTGEISCKDCGENFYRQIDLITHKRFHTGEFLACDVCGRKYIRKGDLTVHKRIHTKKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332403;
90% Identity: iTF_00332403;
80% Identity: iTF_00332403;