Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:82616782-82618758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.14 2.9 8.9 0.2 3 23 187 208 186 208 0.93

2 15 4.4 94 4.2 0.4 1 23 214 236 214 236 0.92

3 15 0.01 0.22 12.4 2.8 1 19 249 267 249 271 0.90

4 15 0.0095 0.2 12.5 0.7 1 21 277 297 277 298 0.92

5 15 9.5e-06 0.0002 22.0 3.4 2 23 326 348 325 348 0.96

6 15 0.041 0.88 10.5 0.2 1 23 354 377 354 377 0.97

7 15 0.0089 0.19 12.6 8.0 1 23 389 411 389 411 0.98

8 15 0.011 0.24 12.3 5.3 1 23 417 439 417 439 0.98

9 15 8.4e-05 0.0018 19.0 3.3 2 23 449 470 448 470 0.98

10 15 0.0021 0.046 14.6 2.2 1 23 479 502 479 502 0.96

11 15 5.4e-05 0.0012 19.6 0.5 3 23 509 529 507 529 0.96

12 15 1.8e-05 0.00038 21.1 1.1 1 23 535 557 535 557 0.99

13 15 7.7e-05 0.0017 19.1 0.3 1 23 562 584 562 584 0.96

14 15 6.4e-06 0.00014 22.5 4.2 1 23 590 612 590 612 0.98

15 15 0.0031 0.067 14.1 2.6 1 23 618 641 618 641 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.14	2.9	8.9	0.2	3	23	187	208	186	208	0.93
2	15	4.4	94	4.2	0.4	1	23	214	236	214	236	0.92
3	15	0.01	0.22	12.4	2.8	1	19	249	267	249	271	0.90
4	15	0.0095	0.2	12.5	0.7	1	21	277	297	277	298	0.92
5	15	9.5e-06	0.0002	22.0	3.4	2	23	326	348	325	348	0.96
6	15	0.041	0.88	10.5	0.2	1	23	354	377	354	377	0.97
7	15	0.0089	0.19	12.6	8.0	1	23	389	411	389	411	0.98
8	15	0.011	0.24	12.3	5.3	1	23	417	439	417	439	0.98
9	15	8.4e-05	0.0018	19.0	3.3	2	23	449	470	448	470	0.98
10	15	0.0021	0.046	14.6	2.2	1	23	479	502	479	502	0.96
11	15	5.4e-05	0.0012	19.6	0.5	3	23	509	529	507	529	0.96
12	15	1.8e-05	0.00038	21.1	1.1	1	23	535	557	535	557	0.99
13	15	7.7e-05	0.0017	19.1	0.3	1	23	562	584	562	584	0.96
14	15	6.4e-06	0.00014	22.5	4.2	1	23	590	612	590	612	0.98
15	15	0.0031	0.067	14.1	2.6	1	23	618	641	618	641	0.96

Sequence Information

Coding Sequence: ATGACATTAGAAAGATTCTGTCGTCTTTGTGCTGTTAGATACCCTTTATCGTCGCTAAATACCCTAGAAAATTTACGAAATGAACAATTAGACAAACTTATTTTAAAATATTTACAAATTAAAATAGACGAAGGGTTTCCGAATATAGCTTGTGAACAGTGCTGCAAAACAATTTCAAATTTTCATAAATTGCTTACCGGAATAAAAGCTGCTCAAGAAAAGTTAAATGATATTTACTCAGAATACAAAAATTTAGATATAAAATTAGAAGATGAAGAAGTCAGAGAAATATTGAGTAAAAACATTGAAGGTACAAATTTCAATAGTGATTCAAAACCGAATAATGTTAAAACTGAAATAGATTACCATAACGATTCCGATAATTTAGACAGTTTTTTAAATTTTATCGATGAAACAAATGATTCGGATTCGTCTGTAACACAACCTTTTGATGAAGAATTGGATGCAAAAGTAGAAAAATTAAATCCAGATAAAAGTAATGATGAAAATTTAAACAAAAGTTCAGTTAAGAAAAATATACGTAAAATTCATTGGCTGTGTTACAAATGTGATGAACGTCTACGAAACGCTGATTCTTTAGAAGAACATTTTCAAGAAGTACATAAATCTAAAGTAGAGTACGTTTGTATTGAATGTCAAGCATTGTTTAAAGATTTAAAAGAATTTAAGGATCATTATTATGGCCATGATGTCGTTAAAAATTCAAAAACATATCGATTTAATTACACGTGCGAAACTTGTGGGAAACAATTTTATGATCCCACAAATTACAAGGGTCATTGTGATATGCATTTAGGAATTAAACGATTTGAATGTGAAATATGTGGAAGAAATTTTGCTAAAAAACAACATAAAGAAATTCATAAACTAACAGTTTGCTCGAAATTATCAAAGGTAAAAGATGAATCGAATAATGAAGATGAAAATTCAGACAATGAAGAAAAATCAAAATGGAAATGTAATAAATGTGATAAAAGTTTTGAAACTGCGCATAATTATCAAAAACATTTGAAAAAAGTTCATGATATCAATCATGAATTTATTTGTTCGGTTTGTGATGAATTATTCGAGAATAATGAAAAATATGATGAACATTTGAAAAGAGTACATGATATTGAAGATGGAATTCAAACGGGATCTACTTATGAGTGTAAAAAATGTTTTAAACATTTTCGACATAAATATTTGTATTTAGCACATACTCTTACTCATACGGGAGTAAAACGTTTTACTTGTAAAAATTGTGGACGGAAATTTCACTTGAAACAACACTTAGTAGCACATTCGTTAACACATTTAGAAACTGTAAATTCTAGCGAAGTGAAATGCAATCAATGTGATAAAATTTGTAAAAATGAATATTTATTAAAACGACATTTAAATACTCATCGCTCTGAAGATGAAAAATATGTACATAAATGCGATATTTGTAAACGAAAATTTATGTATGCAAAATCTTTAGCAGAGCATCAAAAACAAGGACATGACAATGAAGAAGTAATTTGTGATCAATGTGGTAAAGTTTTTAAAGACAAATACCGTTTATCACAACATTTAAGTAGTCACATCGATGGTTTAAAGTTCACTTGTGATCAATGTCCAAAAGAATTTAAAAGTCTAACAGCATTAAAAGCGCATAAAAAAACACATGCTGAAAAAAGTTACGAATGTGAAGTTTGTGGAAAAAAATTTAGTTTACGTGGACAGTTAACAGTTCATTCAACAATACATACAGGACAATTACCATATGAGTGTAGTTATTGTAAAAAACAATTTCGTAGAAAATATTATTTAACTGTACATTTACGACAACATACCGGGGAACGTCCGTATTCTTGTACCGAATGTAATCACTATTTTGCGAGTGATTCTAATTTTATAAAACATTTAAAAGGCCGTCACGGATTAAAGAATTTTTCAGTTGTAAATAAACGTCGTTACCCATTTGATGATTGA
Protein Sequence: MTLERFCRLCAVRYPLSSLNTLENLRNEQLDKLILKYLQIKIDEGFPNIACEQCCKTISNFHKLLTGIKAAQEKLNDIYSEYKNLDIKLEDEEVREILSKNIEGTNFNSDSKPNNVKTEIDYHNDSDNLDSFLNFIDETNDSDSSVTQPFDEELDAKVEKLNPDKSNDENLNKSSVKKNIRKIHWLCYKCDERLRNADSLEEHFQEVHKSKVEYVCIECQALFKDLKEFKDHYYGHDVVKNSKTYRFNYTCETCGKQFYDPTNYKGHCDMHLGIKRFECEICGRNFAKKQHKEIHKLTVCSKLSKVKDESNNEDENSDNEEKSKWKCNKCDKSFETAHNYQKHLKKVHDINHEFICSVCDELFENNEKYDEHLKRVHDIEDGIQTGSTYECKKCFKHFRHKYLYLAHTLTHTGVKRFTCKNCGRKFHLKQHLVAHSLTHLETVNSSEVKCNQCDKICKNEYLLKRHLNTHRSEDEKYVHKCDICKRKFMYAKSLAEHQKQGHDNEEVICDQCGKVFKDKYRLSQHLSSHIDGLKFTCDQCPKEFKSLTALKAHKKTHAEKSYECEVCGKKFSLRGQLTVHSTIHTGQLPYECSYCKKQFRRKYYLTVHLRQHTGERPYSCTECNHYFASDSNFIKHLKGRHGLKNFSVVNKRRYPFDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01061015;
90% Identity: -
80% Identity: -