Basic Information

Insect: Chrysoperla carnea
Gene Symbol: lola
Assembly: GCA_905475395.1
Location: FR997757.1:43111027-43116346[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0022 0.048 14.5 0.6 1 21 3 23 3 24 0.96

2 14 0.00021 0.0045 17.7 0.8 1 22 32 53 32 53 0.96

3 14 0.0099 0.21 12.5 0.3 1 21 72 92 72 93 0.94

4 14 6.6 1.4e+02 3.6 4.2 1 19 101 119 101 130 0.93

5 14 0.00058 0.013 16.3 1.9 1 21 142 162 142 163 0.96

6 14 0.0004 0.0086 16.9 0.2 1 20 171 190 171 192 0.94

7 14 0.001 0.022 15.6 3.8 1 21 198 218 198 219 0.96

8 14 0.00042 0.009 16.8 1.2 1 20 227 246 227 248 0.94

9 14 0.00099 0.021 15.6 0.3 1 21 259 279 259 280 0.96

10 14 4.3e-05 0.00093 19.9 0.4 1 20 288 307 288 309 0.95

11 14 0.0039 0.084 13.8 0.7 1 21 339 359 339 360 0.95

12 14 0.00087 0.019 15.8 4.5 1 21 368 388 368 392 0.91

13 14 0.00082 0.018 15.9 0.3 1 21 412 432 412 433 0.96

14 14 0.002 0.044 14.6 4.5 1 21 441 461 441 462 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0022	0.048	14.5	0.6	1	21	3	23	3	24	0.96
2	14	0.00021	0.0045	17.7	0.8	1	22	32	53	32	53	0.96
3	14	0.0099	0.21	12.5	0.3	1	21	72	92	72	93	0.94
4	14	6.6	1.4e+02	3.6	4.2	1	19	101	119	101	130	0.93
5	14	0.00058	0.013	16.3	1.9	1	21	142	162	142	163	0.96
6	14	0.0004	0.0086	16.9	0.2	1	20	171	190	171	192	0.94
7	14	0.001	0.022	15.6	3.8	1	21	198	218	198	219	0.96
8	14	0.00042	0.009	16.8	1.2	1	20	227	246	227	248	0.94
9	14	0.00099	0.021	15.6	0.3	1	21	259	279	259	280	0.96
10	14	4.3e-05	0.00093	19.9	0.4	1	20	288	307	288	309	0.95
11	14	0.0039	0.084	13.8	0.7	1	21	339	359	339	360	0.95
12	14	0.00087	0.019	15.8	4.5	1	21	368	388	368	392	0.91
13	14	0.00082	0.018	15.9	0.3	1	21	412	432	412	433	0.96
14	14	0.002	0.044	14.6	4.5	1	21	441	461	441	462	0.95

Sequence Information

Coding Sequence: ATGCGTTATGAATGTCCAGTATGCGGAAATTCATATAAATATAAACAAGGTTTATATACACATCGACGTTTTCGATGTGGGAAAGATCCAACATTCAAATGTCCATATTGTCCAAAACGTTGTTACGTTCGTGGTGATTTACAACAGCATATTTTGACATGTAAAGCAAATCCATTTGCTGATAATGATTCAATATTGACCGTAAATGGAAGATATATTTGTCCAGCATGTGGTCGCACATACAAATACAAATCTGGATGGTATCAGCATCGTAAACATGAATGTGGAAAAGCACCAAGCTATCAGTGTAAATATTGTACATATAAAGCACGTTTACCATGTACATTACGAAGTCATGAAGTGTTATGTGTACATCGAAGCAGTGCGCATGATCTGTTCTTTGGGACAGACTATTTAAAAAAATTTGAATGTGAAAAATGTGGAAAAGCATACAAATACAAATGTGGATTATATGCCCATCAAAGATACAAATGTGGAAAAGAACCACAATTTAAATGTCCATATTGCCCAAAACGTAGCTTTGAAAAAGGCAATTTACAACGGCATGTACTTATTTGTGATATCGGAAAATTCGAATGCAAAAAATGTGGAAAATCATACAAATATAAATGTGGCTTATATATTCATCAACGGTATAAATGTGGAAAAGATCCACAATTTAAATGTCCATATTGCCCTAAGCGTTGCTATCAAAAATCTAATATGAAAGGGCATGTAATAATATGTAAATCCAAACCAAACCATTTAAGAAACTATGAATGTGAAAAATGTGGAAAAATATATAAATCTAAGGGTGGAGTTTTTTTGCATCAACGATACAAATGTGGAAGAGAACCCCAATTTAAATGTCCATTTTGTCCAAAACGTAGCTATCAGAAATCAAATTTACAACGGCATGTAATTATTTGTAAATCATTGTCAAAGCCAAGTGACCCAGACCAAGTTTTAGAAATTATGAAAAATTTATTTGCAAAAAAGTATAATTTAACAAAATATAAATGTGAAAAATGTGGAAATTCATATAAATCTAGGGTTGGACTTTATGTACATCGAAAATACAAATGTGGAAAAGAACCACAATTTAAATGTCCATTTTGTCCAAAACGTTGCTATCAGAAATCAGATTTAAAAAATCATGTATTACATGATTTACATAAATTATATGAAAATCATTTAATATTTGATTACACTTTTACAGAAAATTTAAAAAAATATGAATGTGAAAAATGTGGGACAGCATATAAATCTCGGGGTGGACTTTTCTTACATCGACGTTATAAATGTGGAAAAGAACCACAATTTAAATGTCCATTTTGTCCTAAATGCACTCATCACAAAGGAAATTTACAGCAACATATAACTTCTTGTAAATCTATGTTAAAGCCGAAAGACCCAGAGCAGCTAATAGAAATTATGAAAAATTTATTTGCCAAAAAAATGTAA
Protein Sequence: MRYECPVCGNSYKYKQGLYTHRRFRCGKDPTFKCPYCPKRCYVRGDLQQHILTCKANPFADNDSILTVNGRYICPACGRTYKYKSGWYQHRKHECGKAPSYQCKYCTYKARLPCTLRSHEVLCVHRSSAHDLFFGTDYLKKFECEKCGKAYKYKCGLYAHQRYKCGKEPQFKCPYCPKRSFEKGNLQRHVLICDIGKFECKKCGKSYKYKCGLYIHQRYKCGKDPQFKCPYCPKRCYQKSNMKGHVIICKSKPNHLRNYECEKCGKIYKSKGGVFLHQRYKCGREPQFKCPFCPKRSYQKSNLQRHVIICKSLSKPSDPDQVLEIMKNLFAKKYNLTKYKCEKCGNSYKSRVGLYVHRKYKCGKEPQFKCPFCPKRCYQKSDLKNHVLHDLHKLYENHLIFDYTFTENLKKYECEKCGTAYKSRGGLFLHRRYKCGKEPQFKCPFCPKCTHHKGNLQQHITSCKSMLKPKDPEQLIEIMKNLFAKKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -