Ccar010827.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:82613018-82615263[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.024 0.52 11.3 0.9 2 23 194 216 193 216 0.92 2 15 0.025 0.53 11.2 0.5 1 23 222 244 222 244 0.97 3 15 0.00049 0.011 16.6 1.4 1 23 257 279 257 279 0.98 4 15 0.0058 0.12 13.2 0.8 1 20 285 304 285 306 0.92 5 15 0.00058 0.012 16.4 2.8 2 23 335 357 334 357 0.96 6 15 0.13 2.9 8.9 0.1 2 23 365 387 364 387 0.95 7 15 0.0022 0.047 14.5 7.8 1 23 399 421 399 421 0.98 8 15 0.0069 0.15 13.0 2.4 1 23 427 449 427 449 0.97 9 15 1.4e-05 0.0003 21.5 3.1 2 23 459 480 458 480 0.98 10 15 0.0026 0.056 14.3 2.3 1 23 489 512 489 512 0.96 11 15 0.00065 0.014 16.2 0.4 3 23 519 539 517 539 0.96 12 15 3.3e-05 0.00071 20.3 1.1 1 23 545 567 545 567 0.98 13 15 0.00052 0.011 16.5 0.2 3 23 574 594 573 594 0.97 14 15 8.3e-06 0.00018 22.2 5.8 1 23 600 622 600 622 0.98 15 15 0.0024 0.052 14.4 2.7 1 23 628 651 628 651 0.96
Sequence Information
- Coding Sequence
- ATGACATTAAAAAGATTTTGCCGTCTTTGTGCTGTTAAATGTCCACTGTCATCTATAAAAAGCAAAGAAGATTTACAAAACGAACAATTAGACAAACTTATTTTGCAACATTTACACATTAAAATAGAAGATGGATATCCAAACACAGCTTGTAAACTATGCTGCAAAACTATTTCCAATTTTCATAAATTACTTACGGGAATAAAGACAGCTCAACAAAAGTTAAGTAATATTTTCTCAGATTCCAAAAATTTAGATATAAAGTTAGAGGATGAAGAACAATCCAAAATACTGGATAAAAACAGTGATGAAATAAATTTAGATCTCGAAGAATATAAAGAAACTGATGCCACTGACAATGTTAAAACTGAAATAGACGATCATAACAATGACGATTATTACGATATTGATCACTTTTTAAATTTAAAAGATGAAACACCCGATTTTGATTCATCTATAGCGAAACCAGGCAATGAAGTATCAGAAACAGAAAAATTAAATATTGACACAACTAACGATGAGAACTTACAAAAAAGTTCAGATAGTAATTTAAAGAAAAATCAACGTAAAATCCATTGGCGATGTTATAAGTGTAAAAAACGATTACGAAACGCTGAATCTTTGCAAGATCATTTTCAAGAAGTACATAAATCTAAAGTGGAATACGTTTGTGTTGAGTGTCAAGCATTATTTAAAGATTTAAGTGAATTTAAGGATCATTATTATAGTCATGATATTGTAAAAAAATCAAAAAAGTATCCATTTAATTACACGTGCGAAACTTGTGGAAAACAGTTCTATGAAGCTAAAAATTACAAAGAACATCGTGATATGCATTTAGGAATCAAAAGATTTGAGTGCGAAATATGTGGCAAAAATTTTGCTAAAAAACAACATAAGGAAATTCATAAACTAAGAGTTTGCTCAAAATCGAAAAAAATTAATACCGTGGATGAGTTGATTAAGGATGAAATATCAGATAATAACCAAGAACCGAAATGGAAATGTAATAAATGTGATAAAGGTTTTGAAACTGTGCATTATTATCAAAAACATTTAAAAAAGGCTCATGACGTCACAACCAATGATTTAATTTGTACAGTTTGCGATGAATTATTTGAGAGTAATGAGTTATACGATGAACATTTGAAAAAGGTACATGATATTGATGACGGCATTCAAACTGGATCCAATTATGAGTGCAAAAAGTGTTCAAAACACTTTCGACATAAATACTCGTACTTAGCACATACACTTACTCATACGGGAGTAAAACGTTTTTCTTGTAAAGAATGCGGTAGTAAATTTTATTTAAAACAACATTTAATAGCACATTCATTAACACATTTAGAAACTGTAAATTCTAGCGAAGTAAAATGTAATGAATGCGATAAAATTTGTAAAAATGAATATTTATTAAAACGACATCTAAGAACTCATCGTTCTGCCGAAGAAAAATATATTCATAAATGTGATATTTGTAAGCGGAAATTTATGAATATTGAAACTTTAACGGAACATCAAAAACAAGGACATAATAGTGAAGAAGTGATTTGTGATCAATGTGGTAAAGTTCTTAAAGATAAGTATCGTTTAACACAACATTTAAGTAGTCATATAGACGGTATAAAGTTCACTTGTGATCAGTGTCCAAAAGAATTTAAAAGTACAGCGGCCTTAAAATTGCATCAAAAGAAACATGGAGAAAAGCAGCACGGATGTGAAGTTTGTGGAAGAAAATTTAGTTTACGCTCACAATTAAGAGTTCACGCAACAATACATACAGGACAATTACCATATGAGTGTAGTTATTGCAAAAAGCAATTCCGAACAAAATATCATTTGACTGTTCATTTACGACAACATACCGGGGAACGACCGTATTCTTGTACCGAATGTAATCACTATTTTGCAAATGATTCAAATTTTATAAAACATTTAAAAGGGCGTCATGGATTAAAGAATTTTTCTATTGTAAATAAACATCGTTACCCATTCGATGATTGA
- Protein Sequence
- MTLKRFCRLCAVKCPLSSIKSKEDLQNEQLDKLILQHLHIKIEDGYPNTACKLCCKTISNFHKLLTGIKTAQQKLSNIFSDSKNLDIKLEDEEQSKILDKNSDEINLDLEEYKETDATDNVKTEIDDHNNDDYYDIDHFLNLKDETPDFDSSIAKPGNEVSETEKLNIDTTNDENLQKSSDSNLKKNQRKIHWRCYKCKKRLRNAESLQDHFQEVHKSKVEYVCVECQALFKDLSEFKDHYYSHDIVKKSKKYPFNYTCETCGKQFYEAKNYKEHRDMHLGIKRFECEICGKNFAKKQHKEIHKLRVCSKSKKINTVDELIKDEISDNNQEPKWKCNKCDKGFETVHYYQKHLKKAHDVTTNDLICTVCDELFESNELYDEHLKKVHDIDDGIQTGSNYECKKCSKHFRHKYSYLAHTLTHTGVKRFSCKECGSKFYLKQHLIAHSLTHLETVNSSEVKCNECDKICKNEYLLKRHLRTHRSAEEKYIHKCDICKRKFMNIETLTEHQKQGHNSEEVICDQCGKVLKDKYRLTQHLSSHIDGIKFTCDQCPKEFKSTAALKLHQKKHGEKQHGCEVCGRKFSLRSQLRVHATIHTGQLPYECSYCKKQFRTKYHLTVHLRQHTGERPYSCTECNHYFANDSNFIKHLKGRHGLKNFSIVNKHRYPFDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01061033;
- 90% Identity
- -
- 80% Identity
- -