Ccar010675.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:68291752-68293526[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0026 0.056 14.3 2.4 1 23 107 129 107 129 0.97 2 13 0.00071 0.015 16.1 4.3 1 23 135 157 135 157 0.98 3 13 0.00064 0.014 16.2 5.1 1 23 163 185 163 185 0.97 4 13 0.031 0.66 10.9 9.1 1 23 191 213 191 213 0.97 5 13 0.00055 0.012 16.4 3.1 1 23 219 241 219 241 0.98 6 13 0.00025 0.0055 17.5 4.3 1 23 247 269 247 269 0.96 7 13 2.4e-06 5.1e-05 23.9 2.5 1 23 275 297 275 297 0.98 8 13 0.002 0.044 14.6 3.1 1 23 302 324 302 324 0.98 9 13 0.00038 0.0083 16.9 3.7 1 23 330 352 330 352 0.98 10 13 5.1e-07 1.1e-05 26.0 0.5 1 23 358 380 358 380 0.98 11 13 0.015 0.32 11.9 2.9 1 23 386 408 386 408 0.98 12 13 0.00018 0.0039 18.0 2.6 1 23 414 436 414 436 0.98 13 13 1.4e-05 0.00031 21.4 0.9 1 23 442 464 442 464 0.98
Sequence Information
- Coding Sequence
- ATGTCAAATAATTTATTTCATAACGTATTAATTGAAGGCAAGGATATTAAAACTGAAAATTTGAATACAGAAATAATAATTAAAGAAGAAATGTTAGAGGAAGAACAACAATTAAGAATTCAAAATGGAGATACGAAACTACAAGAACAGTTAAATAAGCAATTTATAATAATTAAAGGTGAACCACAATTTTTCTATGGTGAACCATTCGAAGAAGGTCTTTTAATTGAACCAACCTCAGCACACACTGAAAACAACACTTTTCCAAATGAAGATTCAGAAAAAACATTTTCTCATCAAAGTGAAGATAATAAACCGTTTTCATGTGATATTTGTAGTAAACGATTTTCTTTAAAAAAATATTTAGATCAACATAAACAACTTCACACGGGAGGAAAACCCTTTTCATGTGATGTTTGCAACAAAAAATTTGCCTTAAAACATCATTTAGTTCTACATAAACGAGTTCATACGGGAGAAAAACCTTTTTCATGTGAAATTTGTAACAAAACCTTTACTTGTAAGTCCAGTTTAAATAAACATAACCGACTTCATGCTGGAGAAAAACCACATTCATGCAAACAATGTGATAAAAAATTTTCATGTCGAGATCATTTAAAAATACATGAACGGAGTCATAGCGGAGAAAAACCATTTTCATGTGATGTTTGTGAGAAATCTTTTAGTTGTAAAAATAATTTAAATGTACATAAACGAATTCATACCGGGGAAAAACCGTTTTCATGTGATGTTTGTAATAAAAATTTTTCTTCAAATCATCATTTAATTGTACACAAAGAGTATCATACGGGCAAAAAGCGTTTTTCATGTGATATTTGTAATAAAAAATTTATCAATAAAAGTAATTTAACTTATCATTATCAAAGTCATACAGGAGAACGTTTTACATGTGATGTTTGTAATAAAGTATATTCTTGCAAAACCAATTTAATTGTGCATAAACGAAATCACACCGGGGAAAAACCATTTTCATGTGATGATTGTGATAAAACTTTTACATGTCAAAATTTGTTAAATAAACATAGACAAATTCATACGGGAGAAAAACCTTTTTCATGTGATATTTGTAAAAAAGCATTTCCCCGCAAAACTAATTTAATTGCACATTATCGAATTCATACCGGAGAGAAACCGTATTCATGCGATGTTTGTAATAAGAAATTTGCCTGCGGCGACTATTTAGTTAAACACAAACGAACACATACGGGAGAAAAACCATTTTCATGTGATATTTGTAAAAAAGCATTTACCTGTCGAAATAATTTAACGGTGCATTTACGAGTTCATACCGGAGAGAAACCATATTCATGCGATGATTGTGATAAAACATTTACTGTTAATCAGCAACTAGTTCTGCATAAAAAAATGCATAGTGAGAACAAAAGTTGA
- Protein Sequence
- MSNNLFHNVLIEGKDIKTENLNTEIIIKEEMLEEEQQLRIQNGDTKLQEQLNKQFIIIKGEPQFFYGEPFEEGLLIEPTSAHTENNTFPNEDSEKTFSHQSEDNKPFSCDICSKRFSLKKYLDQHKQLHTGGKPFSCDVCNKKFALKHHLVLHKRVHTGEKPFSCEICNKTFTCKSSLNKHNRLHAGEKPHSCKQCDKKFSCRDHLKIHERSHSGEKPFSCDVCEKSFSCKNNLNVHKRIHTGEKPFSCDVCNKNFSSNHHLIVHKEYHTGKKRFSCDICNKKFINKSNLTYHYQSHTGERFTCDVCNKVYSCKTNLIVHKRNHTGEKPFSCDDCDKTFTCQNLLNKHRQIHTGEKPFSCDICKKAFPRKTNLIAHYRIHTGEKPYSCDVCNKKFACGDYLVKHKRTHTGEKPFSCDICKKAFTCRNNLTVHLRVHTGEKPYSCDDCDKTFTVNQQLVLHKKMHSENKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -