Ccar015679.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997758.1:9920271-9921748[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00014 0.0029 18.3 1.6 1 23 101 123 101 123 0.98 2 10 9.1e-05 0.002 18.9 0.1 1 23 127 149 127 149 0.98 3 10 0.00086 0.019 15.8 2.2 1 23 155 177 155 177 0.99 4 10 2.8e-05 0.00061 20.5 0.3 1 23 252 274 252 274 0.96 5 10 1.9e-05 0.0004 21.1 1.3 1 23 280 303 280 303 0.98 6 10 8.1e-06 0.00017 22.2 1.2 1 23 309 331 309 331 0.99 7 10 0.043 0.93 10.5 10.1 1 20 337 356 337 362 0.93 8 10 0.00011 0.0023 18.6 3.4 2 23 366 387 365 387 0.98 9 10 0.00015 0.0033 18.2 3.0 1 23 393 415 393 415 0.97 10 10 7.4e-09 1.6e-07 31.8 2.7 1 23 421 443 421 443 0.98
Sequence Information
- Coding Sequence
- ATGTTAATACAGATATTTAATATTGAGGTGATAAAAGGCGATAAATATCCACAAAATATTTGTTCGAGATGTTTGGATAATTTAAGATCTGCTTACATATTTAGGAATCAATGTTTAGATGCACATAAAAAATTTGAACAATATTTATCACTTAATTCAGAAACTATAAATATCGTCTGTAAGGAAGAACCGGTTAATGCTGTTTTTGTAAAAGAGGAAAAACAATCAAATCATTCAGAAATTGATGACGTTTGGTTCGAATTAGATAATGAATCAGAAAATAATCCAGAGAAAAAATCATTCGAGTGTCAAACATGTGATCTAAAATTTGTAAATAAAAAAAATTACGAAAATCATTTGGAAAAGCATGAAAATTTTTATATTTGTCCTATTTGTGGTGAAATTTTTTTTAGTGAATATCCCTTAAAACAACATATCCTTAAACATTCAGACAAAATACCTTATAAATGTGAAAAATGTAACGTACAATTCAAATATCCAAAAACTTACGTAAGTCATCTCAAAATGCACGAAGAATCTTACATTTCATCTCTTTGTGGTAACCAGTTTCCAAGTAAAAAACGTTTAGAACAACATAGCCAGGAATATTATATTGAAAAAACGAATATTGAAGAAGACTGTGCAAAATCTTTCAACTCAAGTTACAGGGAGTTAAATAATGCAAGTGATGATCGGTTTACTCCAAATAAATCGACAGAAACAACTTGTACAGAAATTCTAACTAAAAAGAAATATTTATGTGAATACTGCGGACGTGACTATAACGATATTTCAAAACTAAATATTCACATTCGAACTCATACCGGTGAAAAACCTTATTCATGTAATGAATGCAATAAATTATTTACAAGTCAATCCAATAGGAACGAGCATATTCGAATAACCCATAAAAAAGAAAAACGCTATAAATGTACCCTTTGTGAGAAGACATTCACAATATCAAATTTGCTAAAACAACATATAAGGATTCACATGAATGATAAACCATTCACATGTGATATTTGTAATCAAAAATTCCGAGAAAAACACCATTTAACACGACATAAACTACACATGAGAACACATACGGGGAAAAAATGTACGTTTTGTGAGAAGAAATTCACAACGTCCGAAAGATTAAAAAATCATTTGAGGATACATACGAATGATAAACCATTTGAATGTGATATTTGTAATCAAAAATTTCGATTAAAACAACATTTAATTCGACATCAATTCGTGCACACCGGTGAAAAACCATTTTCATGTAGTATTTGTGATAAAAAATTTACACAAAATAGTAATTTACGGTCGCACATGAGGACACATACGGGGGAAAAATAG
- Protein Sequence
- MLIQIFNIEVIKGDKYPQNICSRCLDNLRSAYIFRNQCLDAHKKFEQYLSLNSETINIVCKEEPVNAVFVKEEKQSNHSEIDDVWFELDNESENNPEKKSFECQTCDLKFVNKKNYENHLEKHENFYICPICGEIFFSEYPLKQHILKHSDKIPYKCEKCNVQFKYPKTYVSHLKMHEESYISSLCGNQFPSKKRLEQHSQEYYIEKTNIEEDCAKSFNSSYRELNNASDDRFTPNKSTETTCTEILTKKKYLCEYCGRDYNDISKLNIHIRTHTGEKPYSCNECNKLFTSQSNRNEHIRITHKKEKRYKCTLCEKTFTISNLLKQHIRIHMNDKPFTCDICNQKFREKHHLTRHKLHMRTHTGKKCTFCEKKFTTSERLKNHLRIHTNDKPFECDICNQKFRLKQHLIRHQFVHTGEKPFSCSICDKKFTQNSNLRSHMRTHTGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -