Ccar019257.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:127639153-127641848[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.12 2.5 9.1 1.2 1 23 171 194 171 194 0.96 2 15 0.1 2.2 9.3 4.1 2 23 200 222 199 222 0.93 3 15 0.0013 0.029 15.2 1.3 2 23 228 249 227 249 0.96 4 15 0.0032 0.069 14.0 0.5 3 21 257 275 256 278 0.88 5 15 0.014 0.3 12.0 0.6 2 23 286 306 285 306 0.94 6 15 0.00037 0.0079 17.0 0.8 2 23 313 335 312 335 0.95 7 15 0.0038 0.083 13.8 2.1 3 23 343 363 341 363 0.95 8 15 0.06 1.3 10.0 0.1 1 23 369 392 369 392 0.95 9 15 0.00037 0.008 17.0 1.2 3 23 396 417 394 417 0.96 10 15 0.0049 0.11 13.4 4.1 2 23 424 444 423 444 0.97 11 15 0.00047 0.01 16.6 0.2 2 23 451 473 450 473 0.94 12 15 0.0014 0.03 15.2 0.1 1 23 482 504 482 504 0.98 13 15 3.2e-05 0.00069 20.3 2.6 1 21 510 530 510 533 0.95 14 15 0.0023 0.051 14.4 4.9 1 23 539 561 539 561 0.98 15 15 6e-06 0.00013 22.6 0.3 1 23 567 589 567 589 0.99
Sequence Information
- Coding Sequence
- ATGGATACGTGTGCAATGGATGATTTCGATAAAGTTTGTCGTATTTGTATGAAATTTGAGAAAACATTTCTATCAATTACCTCATTTCAAATAATTGACATGATAATAGCGTGTGCTTCTGTGCAGATTTGGGAAAATGATAATCTACCAAATCAAATATGTAACGCTTGTTTTCTTCAATTGCAAAATGCTAAAAATTTTAAAGAGTTATGTGAAAATTCAGACAATACATTTCGTCAAATTATTGAACAGAATAATTTATCCAATAACCAAAATAATTTTGATAATGTAAAAGATGAAGAATTTGAAGATTGCGCTGATGATAATTCGATAGTAAATGTTAAAGAAGAAGATATTCATGAAAATACCACAAATGAAAATACTTTGGAAAAAATAAAAATTACGATTGGTTACAATGAAGATAATTTAAAAAAATTAGAGACAACTAAACACGAAGAAGAGAGTGATGGCTATGAAAGTGCTAAAGATGAAGAAAATGAGATAACAACTTTTACTTGCGAGAAGTGTAATCAAGAATTTAAAAAAGTATGGATATTGGGTAAACATATGCAACGTAAACATAGAGCAAAACCATTAAATTGTAGTGAATGTAAATTAAAATTTTTCCATCCATTACATTTAAAGCAACATCAAGAATTAACACATAATCCATTGAATCTTACTTGTAAAATATGTAACAAAGTATTGAAAGATATTTATTCATTAAAAACTCATAAATTAAAACATTCAAATCAAAAACTTAGATCTTGTGAACGATGCGATGAATCATTCAAAAGTAAACGGGAACTTGAATCTCATAATGAGGAAGTACATGGAATTATCGAAAAAAATGTAACATGTCATATTTGTGGTAAATCAGTAACGAAAAAATATCTAGACGATCACCTAGAAATACATAAAGAACGTGAGAAAATGACATGCGATAAATGTTCAAAAACATTTATTAGTGAGTTAACACTTAAAAGACATATTAAAGAAATTCATGATAACGAACGTAATCATTTATGTAATATTTGTGGGCATGGATTGCGTACAGCGAGTAAATTGCGTATACATTTATTAAAACATTCAAACGAACGACCGTTCGCATGTGACCGTTGTGAGAAAAAATTTTTACGTTTAGCTGGTTTAAAAGATCACATCGCACGTGTACATTCATTTGGATGCAAACGATGTAACAAATCATTCAAAGATCGGGAATCATGGAAATCGCATATCAAGGAAGTACATTTCCTTGAAAAGTATGTAACATGTCATATTTGTGGTAAATCGTTAACAAAAAAAAATCTACACACTCATTTAGACACGCACAAAGAACGTGAGAAACTTACTTGCGAACAATGTTCAAAACCATTCAAAAGTGAAATAACTTTAAAAGCTCATATTAAAGACATTCATGGGGATCAGAAACCAGTACGAAAATATTCATGTAATATTTGTGGACATGCTTCACGTGCACCGGCTGGTTTACGTAAACATTTATTAATGCATTCAGATGCAAGACCGTATCCATGTAATCGATGCGATAAAGCATTTCGAACTAAAGAAGATTTAAAAAAACATCTCAATTGTGTACATTTAAATAATCGACGGTATCAGTGTACATTTTGTCCAAAAGCTTTTTGCGAAAAGAGAACATTAGTGCATCATGAACGACTTCATACCGGGGAAAAACCATATAAATGTGAAGTGTGTGATAAAGCATTTGCTCAAAGAACTGCATGGAAAATCCATTTGAAAACACATAATAATTCAAGAGAAAAATTTTCGCAAAGTGTAGGTGAAAGTATTGTTATAAGTTCTTTAAAAACAAGTGCGTGTAAACTACAAACTTTCTATTAA
- Protein Sequence
- MDTCAMDDFDKVCRICMKFEKTFLSITSFQIIDMIIACASVQIWENDNLPNQICNACFLQLQNAKNFKELCENSDNTFRQIIEQNNLSNNQNNFDNVKDEEFEDCADDNSIVNVKEEDIHENTTNENTLEKIKITIGYNEDNLKKLETTKHEEESDGYESAKDEENEITTFTCEKCNQEFKKVWILGKHMQRKHRAKPLNCSECKLKFFHPLHLKQHQELTHNPLNLTCKICNKVLKDIYSLKTHKLKHSNQKLRSCERCDESFKSKRELESHNEEVHGIIEKNVTCHICGKSVTKKYLDDHLEIHKEREKMTCDKCSKTFISELTLKRHIKEIHDNERNHLCNICGHGLRTASKLRIHLLKHSNERPFACDRCEKKFLRLAGLKDHIARVHSFGCKRCNKSFKDRESWKSHIKEVHFLEKYVTCHICGKSLTKKNLHTHLDTHKEREKLTCEQCSKPFKSEITLKAHIKDIHGDQKPVRKYSCNICGHASRAPAGLRKHLLMHSDARPYPCNRCDKAFRTKEDLKKHLNCVHLNNRRYQCTFCPKAFCEKRTLVHHERLHTGEKPYKCEVCDKAFAQRTAWKIHLKTHNNSREKFSQSVGESIVISSLKTSACKLQTFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332892;
- 90% Identity
- -
- 80% Identity
- -