Ccar021724.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- Zbtb41
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:124109394-124114731[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.2e-06 2.6e-05 24.8 3.9 1 23 174 196 174 196 0.98 2 13 0.001 0.022 15.6 1.6 1 23 236 259 236 259 0.97 3 13 0.0022 0.047 14.5 0.7 1 23 267 290 267 290 0.91 4 13 0.015 0.32 11.9 4.4 1 23 299 322 299 322 0.94 5 13 0.00024 0.0051 17.6 5.6 1 23 328 350 328 350 0.96 6 13 6.2e-06 0.00013 22.5 0.1 1 21 356 376 356 377 0.96 7 13 0.00024 0.0052 17.6 2.8 2 23 500 521 499 521 0.95 8 13 3.4e-05 0.00072 20.2 3.7 1 23 527 550 527 550 0.98 9 13 0.0011 0.023 15.5 1.0 1 23 585 608 585 608 0.96 10 13 0.0011 0.024 15.5 0.1 2 23 617 639 616 639 0.91 11 13 0.00054 0.012 16.5 0.2 2 23 646 668 645 668 0.94 12 13 0.0035 0.075 13.9 6.2 1 20 674 693 674 696 0.94 13 13 9.3e-06 0.0002 22.0 0.3 1 23 702 724 702 724 0.97
Sequence Information
- Coding Sequence
- ATGAGCCATTCAATAAGTATATCAGATTTTTATGATATTTGTAGAATATGTTTAGAAAATAAAGAAAATATGTTAAATGTAAATAGTGAAATATTATTTATGTTAGAAGAATGTTCTTCTGTACAGGAATCCGAGAGTAAATTACCCCAACAAATATGTAAAAGCTGTAACAATCAATTGAAAAAATCTTATGATTTTCGACAAAAATGCTGTGCATCGCTAGAATTATTGAATGAAATTCTCGAAACGAGTAAAAACGGAATAAAGAAAGAAGAACCCGAAACACTAACAGATAATTATGATATGCATCTAGAAATAGAAATCAAATCCGAGGATAATCAAACAGCAGATGACAATGATTCGCAAAATTTATTACATTCACCCGATCCCGATATAAAAGAAGAAGATAGCGACAACAATAGTACGGATAATGTATCAGAAATTGAAAAAACAGAAAAAACAAAAAATAAAATACGAAAGTCAAAAAAGAAAACCGCCACATCCGAAGAAAATTTTGATTATATTTGTGATTTATGTGGTCGGACATTTAAAAAACGATCACACTTGAAAGTCCATCAAAAAACACATATAGGTCCGAAAAATAATGAACCTGATCGTCGTGAATTATGTTATCTTTGTGGAAAATTCATTATACCAAAATGTTTAAGCTACCATTTAAGTACCCATAAAAAATTACAAGAGAAATACACGTGTAAAATATGTGGCCGTAATTATGCCACAAAGAACATTTTACAAAAACATGTGAAAAAGAAACATACGGATGCGGTCAATATACGATTTTACTGTGATATTTGTAACAAAGATTATGTGTCACGTGGTTCATTAAAGATTCATAAATCATTTGTACATAGCGAGCAACGTAATGAGAAGAAACATTGTTGTCCATTATGTGATAAAAAGTATAAATTAACTAGTCATATGAAAGCACACATTAATGCAGCGCATAAAGATTTACGACCGCATGCGTGTACAATATGTAGTAAAGCGTTTCATACGCGAACGTTGTTGAAGAAACATATGCGATATCATACTGGTGAACGTCCGTTTGTATGTACGATTTGCGGAAAAGGTTTTCCAACGAAATACGGTTTGACCACACATATGAAGGAATCAGAGAATAAATTACCGCAACAAATTTGTAAAAATTGTCATTATCTATTAAAAAATTCATACGATTTTCGACAAAAATATTATTTATCATTACAAATTTTATCAGAAATTCTTGAAAACAATGACAAAACTGATACAGATAATGCAATAAAAATAGAAACAATTGATGTTAAATGTAGCATATTGAACGATTGTAGCGCACCGGTGATAAAATCTGAAAATATTAAATCTGAGGAACAACAAACTGTGATATCTTCATCATCTGATGAAACTGATAATGAAAATATTGAACCAACAACAACCGAAAATATACGTAAAACAAAAAAGAAACGTCATCGATCATGTAAAGATGAACAAGACGATTGTATCTGTGATTTATGTGGACGAAAATTTACCAAACAAAGTTATTTAAAAGTACATAAAATATCTCATTCAAATGAGAAACCATTTAAATGTACAATATGCGATAATACATTTAAGTATTCGTTTACGCTTACCACACATATGAAAACACAACATACCGAACCGGAACGACGTGAAATGTGTTTTATTTGTGGCAAATTTATAATACCACAAAGTTTAAGCTACCATTTGAGTACACATAAAGAGAATAAGGAAAAATTTAAATGTCAAGTGTGTAACAAAGAATATACACAACAAGGTATATTACGTAAACATATTCAAGAAAAACATTCAGAAGCGGCAAATAAAAAAATTTATTGTGAAATATGTAACAAAGGATACGCATCAAAAGATTCACTTAAAATACATAAAGCATACGTGCATACGGAAGGGAAAAAATTAAGTTGTCCAATATGTGGTAAAAAATTTAAAATGATGTTTAACGTGAATGCACATATCAATGCAACACATAAAGATTTACGTCCACACTCGTGTAACATATGTAACAAAGCGTTTCATACGCGTACGTTATTAAAGAAACATATGATTTGTCATACCGGCGAACGGCCATTCGCGTGTACGATTTGTGGTAAAGCATTTGGTACGAAAACTGTTTTAACAACGCATATGAAAGTTCATTCAAAATGA
- Protein Sequence
- MSHSISISDFYDICRICLENKENMLNVNSEILFMLEECSSVQESESKLPQQICKSCNNQLKKSYDFRQKCCASLELLNEILETSKNGIKKEEPETLTDNYDMHLEIEIKSEDNQTADDNDSQNLLHSPDPDIKEEDSDNNSTDNVSEIEKTEKTKNKIRKSKKKTATSEENFDYICDLCGRTFKKRSHLKVHQKTHIGPKNNEPDRRELCYLCGKFIIPKCLSYHLSTHKKLQEKYTCKICGRNYATKNILQKHVKKKHTDAVNIRFYCDICNKDYVSRGSLKIHKSFVHSEQRNEKKHCCPLCDKKYKLTSHMKAHINAAHKDLRPHACTICSKAFHTRTLLKKHMRYHTGERPFVCTICGKGFPTKYGLTTHMKESENKLPQQICKNCHYLLKNSYDFRQKYYLSLQILSEILENNDKTDTDNAIKIETIDVKCSILNDCSAPVIKSENIKSEEQQTVISSSSDETDNENIEPTTTENIRKTKKKRHRSCKDEQDDCICDLCGRKFTKQSYLKVHKISHSNEKPFKCTICDNTFKYSFTLTTHMKTQHTEPERREMCFICGKFIIPQSLSYHLSTHKENKEKFKCQVCNKEYTQQGILRKHIQEKHSEAANKKIYCEICNKGYASKDSLKIHKAYVHTEGKKLSCPICGKKFKMMFNVNAHINATHKDLRPHSCNICNKAFHTRTLLKKHMICHTGERPFACTICGKAFGTKTVLTTHMKVHSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -