Ccar018855.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:124156230-124158299[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.7e-05 0.00058 20.5 0.6 3 23 220 240 218 240 0.97 2 15 0.002 0.042 14.7 0.3 1 23 248 270 248 270 0.97 3 15 0.0045 0.097 13.6 1.2 1 23 276 299 276 299 0.97 4 15 0.039 0.84 10.6 1.2 3 23 306 327 305 327 0.92 5 15 0.001 0.022 15.6 3.9 1 23 332 354 332 354 0.96 6 15 6.4e-05 0.0014 19.4 0.4 2 23 360 382 359 382 0.92 7 15 0.55 12 7.0 0.1 2 23 390 412 389 412 0.95 8 15 0.18 4 8.5 0.4 1 23 419 441 419 441 0.94 9 15 0.00065 0.014 16.2 5.2 1 21 447 467 447 470 0.95 10 15 4.2 90 4.2 0.3 3 23 494 511 492 511 0.70 11 15 0.0029 0.062 14.2 0.7 2 23 517 539 516 539 0.96 12 15 0.0018 0.039 14.8 0.0 2 20 549 567 548 568 0.96 13 15 0.0074 0.16 12.9 2.8 1 23 577 600 577 600 0.97 14 15 4.7e-06 0.0001 22.9 2.1 2 23 607 628 607 628 0.98 15 15 3.2e-06 6.8e-05 23.5 0.5 1 23 634 656 634 656 0.98
Sequence Information
- Coding Sequence
- ATGAATTGTAATATTTTAAATACTGATGATTTTAATATAATATGTCGAGTCTGTTTAATTTCAAAAGAAAATATGACATATTTGTCAAATGATGATTACCATATGTTTAAATGCATGTTAGAAAAATATATTTCGGAATTTGAAACATTACGAACAGATAAATTTCCACAACAAATATGTATAGAATGTTTAATAAAATTACGCAATTCGTATGATTTCAAGCAAAAATGTATATTTTCTTTGAAAATATTATACGATATATTACCAAAAATAAATAAATCGAATAAAATCGAACTAGATTCGAAAAATGATTCAAATAAAAATTTATTAAAACATGAAAATGATTCCGGGCAGATTGAAAGTACGCCTGATAAAGATATCAATTTTGATAATACTAAATACGCTTTTTATATTGTAGACGATGATAATCCGTCTTACAGTGATGGAAATGAAATTGAACTTACGTATGTAGATTCAGAAAATTTAAAAAATGAAATTGAGGACGATAAAAGTGATGATGAATGGGACAAAAAGGAAGTCGAATTTTCGGAAAATAGTGATAAAAATAAGAATGAATTGAATGAAGAGGAAACTGAATTGGCGAAATCAATGATTGAGTTTTTATCAAAACCATCAAACAAATTAATCGATATAATTTGTAATATATGTAATCAAACATTCTCGGCTCGTTCAAAACTAGTGAAACACATTAAAACCCATGTTAAGGGTGCCGAATATTCATACTCTTGTAAACTTTGTGGTGAAGGATTTTTTTCTAATAGAGGCTTAGCTCAACATGTAACATCCCATTCTACAGGACCATCATATCACTGCGATTTATGCTCAAAAGTTTTTGCAAAACTAAATGCATTGGGGAAACATAATCGCACGGAACATAATGCAAAACCAGTTGATTGTACAAAGTGTTCCAAAAAATTTTCACATCCTTTACTGGTGGAACGTCATGAGCAAGAAGCTCACAATGAAGTGGAACATGTATGTGAAGATTGCGGGGAGAAATTTTCAACTAAATTAAGTTTCAAACAACATCGTTTTAAGCATTTTAGTAAACGATTAACTTGTATAGATTGTGATAAAAGTTTTACAACATTGGAGACATTAAGAAAACATGTACGTGTGGTGCATGAAAATGCTCAAGTGCCTCTTGAATGTAAATCATGTGTGGAAAATTTTGTAAATCTTGTTGAAATCGAACGTCACGAACAAACATTTCACAGTTCTGAAGAAAAAAACTACATATGTAATATTTGCGATGAGAAATTTTTATCGAAAGCATTCTTAGACTTACACAAAATAAAACATTCAGATTCACGATCGTTTAACTGCTCGTACTGTGATAAAAATTATAAAAGACGAGGTGAATTAAACAAACATCTACGTTGTAAACATCCAAAAAATTCGTTGAATTCGGAAGCAGTAGTAGAAAATTGGCCGCGTTATGGACGATATTCTGAAATGTGTTTTATTTGCGGTAAAGATGTGAAAAATTTAAGCGTACATTTAAATTCACATAATAGAAAAAGTATTAAGTGTTTAGTATGTTCAAAAATATATACATCGAAATACATTTTACGACAGCATATGCGCATTCAACATCCAGCGGATGGTATTGTTAAAAAAGTTTACTGTCCAATATGTAATAAAGCGTTAGCTGAACGTAGTAATTTAGCAAAACATATGGTATGCGTACATTCAACAGTTAAACCACATAAATGTCCATTTTGTGAAAATAAATATAAATTGATTTCGCACCTTAATGCACATATTCGAAGTGTACATAATCATGAAAAACCTAATGAATGTACAATTTGTAAAATGGCATTTTTTAGAAAATCTAGTTTAAAAAAACATATAAGAACACATGAGGGTAAAAGACAGTATGTTTGTGATACGTGTGATGAATCTTTTAAAAACAAGAATGATTTGGATAATCATATGAAAATTCATTCAAGTGACTTAGGTACATAA
- Protein Sequence
- MNCNILNTDDFNIICRVCLISKENMTYLSNDDYHMFKCMLEKYISEFETLRTDKFPQQICIECLIKLRNSYDFKQKCIFSLKILYDILPKINKSNKIELDSKNDSNKNLLKHENDSGQIESTPDKDINFDNTKYAFYIVDDDNPSYSDGNEIELTYVDSENLKNEIEDDKSDDEWDKKEVEFSENSDKNKNELNEEETELAKSMIEFLSKPSNKLIDIICNICNQTFSARSKLVKHIKTHVKGAEYSYSCKLCGEGFFSNRGLAQHVTSHSTGPSYHCDLCSKVFAKLNALGKHNRTEHNAKPVDCTKCSKKFSHPLLVERHEQEAHNEVEHVCEDCGEKFSTKLSFKQHRFKHFSKRLTCIDCDKSFTTLETLRKHVRVVHENAQVPLECKSCVENFVNLVEIERHEQTFHSSEEKNYICNICDEKFLSKAFLDLHKIKHSDSRSFNCSYCDKNYKRRGELNKHLRCKHPKNSLNSEAVVENWPRYGRYSEMCFICGKDVKNLSVHLNSHNRKSIKCLVCSKIYTSKYILRQHMRIQHPADGIVKKVYCPICNKALAERSNLAKHMVCVHSTVKPHKCPFCENKYKLISHLNAHIRSVHNHEKPNECTICKMAFFRKSSLKKHIRTHEGKRQYVCDTCDESFKNKNDLDNHMKIHSSDLGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -