Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:53882388-53886142[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.43 9.4 7.3 0.9 2 23 196 217 195 217 0.96

2 12 8e-05 0.0017 19.1 2.0 1 23 223 245 223 245 0.99

3 12 8.2e-07 1.8e-05 25.3 0.2 1 23 251 273 251 273 0.99

4 12 1e-06 2.3e-05 25.0 3.2 1 23 279 301 279 301 0.98

5 12 0.00039 0.0085 16.9 1.0 1 23 312 334 312 334 0.97

6 12 0.0027 0.059 14.2 1.9 1 20 339 358 339 362 0.89

7 12 0.00075 0.016 16.0 2.5 1 23 370 393 370 393 0.92

8 12 0.00022 0.0047 17.7 0.4 1 23 398 421 398 421 0.93

9 12 0.0019 0.041 14.7 4.7 1 23 427 449 427 449 0.97

10 12 0.0001 0.0022 18.7 5.7 1 23 455 477 455 477 0.98

11 12 0.00013 0.0029 18.4 0.9 1 23 483 505 483 505 0.93

12 12 1.2e-05 0.00027 21.6 3.8 1 23 511 533 511 533 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.43	9.4	7.3	0.9	2	23	196	217	195	217	0.96
2	12	8e-05	0.0017	19.1	2.0	1	23	223	245	223	245	0.99
3	12	8.2e-07	1.8e-05	25.3	0.2	1	23	251	273	251	273	0.99
4	12	1e-06	2.3e-05	25.0	3.2	1	23	279	301	279	301	0.98
5	12	0.00039	0.0085	16.9	1.0	1	23	312	334	312	334	0.97
6	12	0.0027	0.059	14.2	1.9	1	20	339	358	339	362	0.89
7	12	0.00075	0.016	16.0	2.5	1	23	370	393	370	393	0.92
8	12	0.00022	0.0047	17.7	0.4	1	23	398	421	398	421	0.93
9	12	0.0019	0.041	14.7	4.7	1	23	427	449	427	449	0.97
10	12	0.0001	0.0022	18.7	5.7	1	23	455	477	455	477	0.98
11	12	0.00013	0.0029	18.4	0.9	1	23	483	505	483	505	0.93
12	12	1.2e-05	0.00027	21.6	3.8	1	23	511	533	511	533	0.99

Sequence Information

Coding Sequence: ATGGAATACGTAGAAAATATATTAATTTTATCAACGAATGATATTAAAAACATTTGCCGTACTTGTTTGTCTGGTGAAGAACTACAGTCAATTTTTTCTGAGGGTAATAGTTATTCAATTGTAAGTATGTTAATGGCAGTTGCTAATGTACAGATTTCAGATGCGGATAATTTACCAACAAAAATATGTGATGCTTGTATAAAAACCTTAAATTTAGCATTCTGTTTTAAACAGCGTTGTGAAGATACCGAAAAAAAATTAAAAAATTTTCTAAACGCACACAAAGTAATTAATGAGGATGTCGATGTCGATATTAAGACTGAAATCATAGTGGAAAATTTCGCTTATAATGATGAGGATTCTATTGATAAAAGTAACGAAATAGAAAATATCTTGTATGAAGAAAATGCCAATGATACGATTCAATCCCCTAGGTTTAACAACGACTATAAAAATACAATAGAGGAAAGTTCTCAATATCATCCAGAAAACGACGAAATTAAGGAAATTAGTCCCAGTGACAAGGGATTAGGTATTAGCCTAATTAAAAATTTACAAATTTCAATGTCTAAAAATTTAATGACGACATGTACAATATGTTCAAGAGAAATACAATCTAGACGTTTAAAAGATCACATACGTACTATGCATACACTATCCAAACAATATCAATGCGAAACATGTGACCGAAAATTTCAGTTAAAATCAAATTATGTAAGACATTTAAAAATCCATACTGGCGAACGTCCTTACAAGTGTGAAATTTGTGATAAAGGGTTTATACAAGCGTTTGGATTGAAGGAACATATGCGCGTACATACAAAAGAAAGGCCATATGTGTGTAAATTTTGTGATAAAACATTTACACAATCGGGTAAATTAAACAAACATCAAAAAAGCCACTTGACAGAAAATGATAACGAAAGTAATGCTTTTAAATGCCAAACATGTAATAAAAGTTTTAATAGTAATCTTGGGTTAAGTGCGCATTCACGTGCGCATGCAAATGGTGAATTTTATTGTACAGAATGCGATAAGCCGTTTACATCACAGCAATATTTAGACGATCATTTTTATTTTGAACATACAGTAAAAAGTGAAAATGGTTACAATTGCCTTGATTGTTCGAAAGAATTTTCAACCAAAGAATCTTTAACTACCCATAAATATAACTTTCATTCTGGTAAATTATTTTTATGTAATTATTGTGGTAAAAGTTTAACATCTAGCACTAGTCTTAATTTACACGTAATAAGTTTACACTCCAATGAGCGACCTTTCCAATGTGAATGTTGTTCGAAGACATTTAAAACGAAATCTACGCTAACAATACATAAACTAATTCATACAGGGGAAAGACCTTTTGCTTGTTCGAAATGTGATAAAAAATTTCACCAACGTGCCCATTTATTATCGCATTTGCGCACTCATTCGGGTGAAAAACCATTTAATTGTATTATGTGTGGAAAATATTTCTCTTCAAAAATTAATTACACTGTACATATGCGAATTCATTCTGGAGAAAGGCCATATGTGTGTCAAGTTTGTGACAAAGGTTTTTATCATTCAAGTACAATGAAGAAACATCAAAGAAGTCATAAATTACAATAA
Protein Sequence: MEYVENILILSTNDIKNICRTCLSGEELQSIFSEGNSYSIVSMLMAVANVQISDADNLPTKICDACIKTLNLAFCFKQRCEDTEKKLKNFLNAHKVINEDVDVDIKTEIIVENFAYNDEDSIDKSNEIENILYEENANDTIQSPRFNNDYKNTIEESSQYHPENDEIKEISPSDKGLGISLIKNLQISMSKNLMTTCTICSREIQSRRLKDHIRTMHTLSKQYQCETCDRKFQLKSNYVRHLKIHTGERPYKCEICDKGFIQAFGLKEHMRVHTKERPYVCKFCDKTFTQSGKLNKHQKSHLTENDNESNAFKCQTCNKSFNSNLGLSAHSRAHANGEFYCTECDKPFTSQQYLDDHFYFEHTVKSENGYNCLDCSKEFSTKESLTTHKYNFHSGKLFLCNYCGKSLTSSTSLNLHVISLHSNERPFQCECCSKTFKTKSTLTIHKLIHTGERPFACSKCDKKFHQRAHLLSHLRTHSGEKPFNCIMCGKYFSSKINYTVHMRIHSGERPYVCQVCDKGFYHSSTMKKHQRSHKLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -