Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:33551006-33552043[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.5e-05 0.00075 20.2 6.5 1 23 17 39 17 39 0.98

2 8 4.9e-07 1.1e-05 26.0 1.2 1 23 45 67 45 67 0.99

3 8 2.2e-07 4.7e-06 27.1 1.4 1 23 73 95 73 95 0.99

4 8 6.6e-08 1.4e-06 28.8 1.5 1 23 101 123 101 123 0.98

5 8 1.9e-05 0.0004 21.0 0.5 1 23 167 189 167 189 0.98

6 8 3e-06 6.4e-05 23.6 0.5 1 23 195 217 195 217 0.98

7 8 0.00011 0.0024 18.6 0.6 1 23 226 248 226 248 0.98

8 8 5.9e-08 1.3e-06 28.9 0.7 1 23 276 298 276 298 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.5e-05	0.00075	20.2	6.5	1	23	17	39	17	39	0.98
2	8	4.9e-07	1.1e-05	26.0	1.2	1	23	45	67	45	67	0.99
3	8	2.2e-07	4.7e-06	27.1	1.4	1	23	73	95	73	95	0.99
4	8	6.6e-08	1.4e-06	28.8	1.5	1	23	101	123	101	123	0.98
5	8	1.9e-05	0.0004	21.0	0.5	1	23	167	189	167	189	0.98
6	8	3e-06	6.4e-05	23.6	0.5	1	23	195	217	195	217	0.98
7	8	0.00011	0.0024	18.6	0.6	1	23	226	248	226	248	0.98
8	8	5.9e-08	1.3e-06	28.9	0.7	1	23	276	298	276	298	0.99

Sequence Information

Coding Sequence: ATGTCTAGTTATTCAGAAGATTCCGACGACACTACCGAAAAAACATCCTTCACATGTAACATTTGTCATAAAACATTTTCTAAGAAAAATTATCTATCGAAACATAAAAAAATTCATTCAGATGAAAAAATATATAAATGTAATATTTGTGAGAAATCATTTATAGAATTAAGTACCTTACGACGTCATCGACGTGTTCATTCTGGGGAAAAACCTTACAAATGTTTAACATGTAACAAAACTTTTAGTGACCAAGGTAATCTTGCACGTCATAAACGAATTCATGTGATTAGTGGACCATTTACATGTAATATATGCGATAATACGTTTACAACACGAAGTAATTTAAGTAATCATATGCGAATACATAACGGGGGGAAATCAAATTTAAATGATAATGAACCTACACAACATTTTGAAGAAAACACATACTCTGAAGATAGTTCCGAAAATCATGATGAATCGTTGGATGAATCAACACAAATTCAAGAACGACCTTATGTGTGTAAAACTTGTAGTCAAGCATTTCGGTTACAAGCCTCGTTAAAAATCCACATGAAAATTCATACTGGAAAAAAAGCATACAAGTGTAATATTTGTGATCAAAAATTTCGTGATTGGAATGGTTTAAAAATGCATGGACGAATTCATACCGAAGACAAACAAGAACGACCTTTTTCATGCGATGAGTGTGATCAATCATTTCGATTGGAAACATCGTTAAAAATACATTCTAGAATACATAAACAGTCTGATTCGTGTAATGTTTCAAAACAAAGTAAGCGAAATAGTTTACAAAAAACGATTTATGTTGGAGATCGAACGTATAAATGTGAAATTTGTGATAATACGTTTACCGGACAAAGTAATTTAACTAATCATATGAGAATTCATAGTTAA
Protein Sequence: MSSYSEDSDDTTEKTSFTCNICHKTFSKKNYLSKHKKIHSDEKIYKCNICEKSFIELSTLRRHRRVHSGEKPYKCLTCNKTFSDQGNLARHKRIHVISGPFTCNICDNTFTTRSNLSNHMRIHNGGKSNLNDNEPTQHFEENTYSEDSSENHDESLDESTQIQERPYVCKTCSQAFRLQASLKIHMKIHTGKKAYKCNICDQKFRDWNGLKMHGRIHTEDKQERPFSCDECDQSFRLETSLKIHSRIHKQSDSCNVSKQSKRNSLQKTIYVGDRTYKCEICDNTFTGQSNLTNHMRIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00332612;
90% Identity: iTF_00332612;
80% Identity: iTF_00332612;