Ccar012121.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
Snai1
Assembly
GCA_905475395.1
Location
FR997755.1:32954056-32963111[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.043 0.93 10.5 0.6 1 23 390 412 390 412 0.95
2 12 0.00014 0.003 18.3 1.6 1 23 420 442 420 442 0.99
3 12 8.6e-05 0.0019 19.0 0.4 2 23 450 471 449 471 0.97
4 12 0.00023 0.0049 17.6 1.0 1 23 477 499 477 499 0.98
5 12 0.00012 0.0025 18.5 2.1 1 23 507 529 507 529 0.99
6 12 3.5e-05 0.00077 20.2 0.5 1 23 535 557 535 557 0.96
7 12 0.00012 0.0026 18.5 0.3 1 23 563 585 563 585 0.98
8 12 3.5e-06 7.5e-05 23.3 1.2 1 23 591 614 591 614 0.96
9 12 0.001 0.022 15.6 1.3 1 23 620 643 620 643 0.95
10 12 4e-05 0.00086 20.0 1.8 1 23 649 671 649 671 0.99
11 12 0.00053 0.011 16.5 0.4 1 23 677 699 677 699 0.94
12 12 0.0031 0.066 14.1 0.1 1 23 705 729 705 729 0.93

Sequence Information

Coding Sequence
ATGAACGAAAATACGTCAGAAACGGAAATACGAGACAAAATGCATTGTCTAATTTGCGACAGCCGGGTCGGTGTTTCAACCCGAAATTCTGTGTCTATTTTTTCCAAACAGATACAAACCATTTCGGGCTCGCCGATGAACTCATTAATTTCAAAGATTGTGGATAAAGAATTAAATGAAGAGAATGTACATTCACTTGTAGTGTGTAAGAAATGCTTCAAATTATTTGCTGAATATGATGAGCTAGAGGTCAGATTAAATGAAATAAAGTTTGAAGTTGGTAATAATTATAAACGTACAATTTCAAAACATAAATTTGATAATCAAATGATACGACATGATTCTGATGTTCTTGAACATATTAAAAAAGAAGATGATTATAATAGTAATGATATAAAAAAAGAACTTGAAGATAATGAAAATATAGTTGATGTTTCACAACACAATTATTTAAATAACACAAATACCAATAACAATTCTGTAAATATAAGTAAAAAATTTTTAACCATCCCCTCATCGGATGATGAAACAATGGAGAGAGCACAAAAACGAAAATTTGAAGCGGTCGAATTAGATTTGGAACGATTGCACAGCAACGAAATGGAAGTAGTTGAAATGTCTACAACAGAAATTGAAATGGTTGAGCAGGGCGATGATGTGCCACAAATATCCATTCCAGAATGTAGTGATCAAGATGATTCACAAGAATTTCACCATTATGTTCAAGAAGACGAACCTGTTGATGCAGGCGCAATTGACAATTCAGATGATTCTGATTATCAACCACCAATGGTATTAGAAGTTATACAAGATGGTGAAGAAATTGATAATGATAAGCAAAATGGGGACGATACTAACACTGCTGCTTTATTGGAAGCTGCAGCAATGGCAGAACAAACACTTCAAGAAGATGGGTCCATTATATTTAATGTAAAATTGGAACCGGGAATAATATATGAAGAAATAAAACAAGTACAACGACGACCTAGAAGTTCGCAAGGTTTACAGAAGAAAATAATTAAAACAAAAGTTGGAGAATACCCATATCCTATTGTATCACGTGATGGAACTGAGTACACATGTTTAGTATGTGATGGTAATGAAAAAGTAATTGGTGATGCAAAATCAATAATGGCACATGTAAAAAACGATCATGATTTACGTGTATATATTTGTGATGTGTGCGGTGATGATTTTCGCAAACGTAACGAGCTTAGTCATCATTTAGATGAACATGTTGCAACCGAAGAGGGCGATTTTCAATGTGAAGTATGTAATAGAATATTTTCAAATTTACGGCTATTCAGAATACATAAACGAATGCATTATCCGCAATCAAAATTGTGGACATGTGAAACATGTGGCAAACGTTATAGCTCAAAAAATTTATTAGATGAACATATAAACACACATACAGGATTACGGCCTTATGTGTGTGGAGTGTGTAATAAAGATTTTGCATCGAAGTACACATATAGAGCGCATAATAAAACACATGAAGTAGTTAGACCACGGCCCTACAGCTGTTCACAATGTGATAAAACATTTTTAAGTCAACAAAATTTAACTCAACATGAACGAACACATACTGGTGTTAAAGATTTCGTGTGTCACTTATGTGGTAAAGCCTTTGGATCACCACATAATTTAGAAGTACATAGTATAGTACATACCGGCTACAAACCATTCATCTGTCGCACATGTGGCAAAGCATTTGCACGTAAAGCTGAAATACGTGATCATGAACGCACTCACACCGGCGAACGGCCCTATCAATGTGAATTTTGTGGTGCAACATTCAGTCAACGTAGTAATTTACAATCACATAAACGTGCCACACATTATGATGATAAACGTTACAAGTGTAGAGAATGTAATAAAGGATTTAAACGTAGACGTTTATTAGATTATCATGTTAAAGCTGTACATACTGGCGAGCGACCATTTAAATGTGGGGTATGTGATGCTACATTTGTGTATCCAGAACATTTTAAGAAACATCGACGTATACATACTGGAGAGAAGCCATTCTTATGTGAAGTATGTGGAAAAGCATTTAATTCAAGAGATAATCGAAATGCACACAGATTCGTACATAGTGATAAAAAACCATATGAATGTCTGGTATGTGGAATGGGTTTTATGCGAAAACCATTATTATATGCTCATATGGAAACTCAAGGACATTTAAATGATACAATTGTTGTGAATCAACCACGATTAACTACAGATGATGATCAAGTGGTTACATTTAATTTAGAGGGAGAAATGGAAATCATACATGAAGAAGATCAAGATATGGATACTGAAGATACAAAATTATATATTACAGAATTAAAAGATCATCATGTTATCATTCAGAATGCTGATGAAGGTACACTTATTGTACCAGAATCACATGACATGAATCAAGAAGTTAAACATTTAATAATTGATGGACAGTATGCTGGCCAAGTGGATGATCAAGACGAAGAACATGTTACCACAGAAATACAAGAAATTACCTCCGAACAATTAGTTAAAGAGCATATTTTAAATGAAAATGAAGAATATGAAGAAATTGTACATGAAAATGCAATACAAACAAGTAATGGTTCATATCAGATTGTACAAGTGACATTAAACAACAGTGACGGTGAAGAACAAGACGCTTGGGTGAATCTAGTATCTACTTCTTAG
Protein Sequence
MNENTSETEIRDKMHCLICDSRVGVSTRNSVSIFSKQIQTISGSPMNSLISKIVDKELNEENVHSLVVCKKCFKLFAEYDELEVRLNEIKFEVGNNYKRTISKHKFDNQMIRHDSDVLEHIKKEDDYNSNDIKKELEDNENIVDVSQHNYLNNTNTNNNSVNISKKFLTIPSSDDETMERAQKRKFEAVELDLERLHSNEMEVVEMSTTEIEMVEQGDDVPQISIPECSDQDDSQEFHHYVQEDEPVDAGAIDNSDDSDYQPPMVLEVIQDGEEIDNDKQNGDDTNTAALLEAAAMAEQTLQEDGSIIFNVKLEPGIIYEEIKQVQRRPRSSQGLQKKIIKTKVGEYPYPIVSRDGTEYTCLVCDGNEKVIGDAKSIMAHVKNDHDLRVYICDVCGDDFRKRNELSHHLDEHVATEEGDFQCEVCNRIFSNLRLFRIHKRMHYPQSKLWTCETCGKRYSSKNLLDEHINTHTGLRPYVCGVCNKDFASKYTYRAHNKTHEVVRPRPYSCSQCDKTFLSQQNLTQHERTHTGVKDFVCHLCGKAFGSPHNLEVHSIVHTGYKPFICRTCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCRECNKGFKRRRLLDYHVKAVHTGERPFKCGVCDATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYAHMETQGHLNDTIVVNQPRLTTDDDQVVTFNLEGEMEIIHEEDQDMDTEDTKLYITELKDHHVIIQNADEGTLIVPESHDMNQEVKHLIIDGQYAGQVDDQDEEHVTTEIQEITSEQLVKEHILNENEEYEEIVHENAIQTSNGSYQIVQVTLNNSDGEEQDAWVNLVSTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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