Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997755.1:23879804-23883515[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00022 0.0048 17.7 3.2 2 23 45 67 44 67 0.95

2 14 0.003 0.064 14.1 0.8 1 23 159 181 159 181 0.98

3 14 0.031 0.66 10.9 3.4 1 23 192 215 192 215 0.97

4 14 1.7e-05 0.00037 21.2 1.4 1 23 230 252 230 252 0.99

5 14 0.00052 0.011 16.5 1.3 2 23 270 291 269 291 0.96

6 14 1.6e-05 0.00035 21.2 2.0 1 23 304 326 304 326 0.98

7 14 0.26 5.6 8.0 0.6 2 21 336 355 335 358 0.80

8 14 0.00011 0.0024 18.6 1.4 3 23 367 388 365 388 0.94

9 14 8.8e-06 0.00019 22.1 0.7 1 23 394 416 394 416 0.96

10 14 1.7e-05 0.00036 21.2 0.9 1 23 422 444 422 444 0.99

11 14 0.0017 0.036 14.9 3.0 1 23 450 472 450 472 0.91

12 14 0.18 4 8.5 5.2 1 23 478 500 478 500 0.96

13 14 0.0014 0.029 15.2 3.2 1 21 506 526 506 527 0.96

14 14 6.4e-07 1.4e-05 25.7 3.3 1 23 534 556 534 556 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00022	0.0048	17.7	3.2	2	23	45	67	44	67	0.95
2	14	0.003	0.064	14.1	0.8	1	23	159	181	159	181	0.98
3	14	0.031	0.66	10.9	3.4	1	23	192	215	192	215	0.97
4	14	1.7e-05	0.00037	21.2	1.4	1	23	230	252	230	252	0.99
5	14	0.00052	0.011	16.5	1.3	2	23	270	291	269	291	0.96
6	14	1.6e-05	0.00035	21.2	2.0	1	23	304	326	304	326	0.98
7	14	0.26	5.6	8.0	0.6	2	21	336	355	335	358	0.80
8	14	0.00011	0.0024	18.6	1.4	3	23	367	388	365	388	0.94
9	14	8.8e-06	0.00019	22.1	0.7	1	23	394	416	394	416	0.96
10	14	1.7e-05	0.00036	21.2	0.9	1	23	422	444	422	444	0.99
11	14	0.0017	0.036	14.9	3.0	1	23	450	472	450	472	0.91
12	14	0.18	4	8.5	5.2	1	23	478	500	478	500	0.96
13	14	0.0014	0.029	15.2	3.2	1	21	506	526	506	527	0.96
14	14	6.4e-07	1.4e-05	25.7	3.3	1	23	534	556	534	556	0.99

Sequence Information

Coding Sequence: ATGTTAAATCTTTACGATACAAAAATAATTTTAGATTATGAAGTATTAACAACATTTTATTCGGAAATCAATGATGCTGAATATGAAATTATTCGAATGAAAATTGATTATTTAATGAAAAATTTCACAAATAAGTGTGAAATTTGTCCAAAATCATTTTCAAAATGTGAATATTTACAAAAGCATACACTTAATCAACATGGAATTACAAAGAATGAAAAAATTGATAGTTGTTTAAGTGGAACAGATAAAATTGAAGGTAATGAAAAAAATAAAATTGAAAGCATGGTAATAAAAATTGAATCAAATGTAATCAAAGATGACTGTGACTCAAATGAGTATGATGCTGATGTGAACACGGAGGATATTGAAGATATCCATATTGATGACATAGAAGATATTCATGGTGAGGATATTGAGGATAAGTGTGGAACAGATAATGATCTAAAACCATTGGACACTGAACGTAATGAATACAAATGTAATATTTGTATTGTAACATTTAAAACAAATCAAGGCTATCAAAATCATTTAAGAGCACATCGAATGGGCAGAAGAAAAAAAATACAAATTTATAAATGTACAAAATGTTCGGAACGTTTTATAACATCACAAAGATTAACATTTCATATGAAAAGTAATCATAATGCAAATATTGAGGATAGTATTGATGAAAATGAAAGTATTTATAAATGTACAAAATGTTCCCGTGTATTTAAACGTCCACAGGGCTTATCTATTCACCTGAAATCACATGAAAATGATCAATTCATTTTAAAAGATATGTACACAACAGATGGTCTATTACAATGTTCAGTCTGTTCAAAAACATATGCATCATACAAAACATTAAAAAAACATGCACAAAGTCATAACATTGAAGAAAGTGAACAATTAAAAGAAAATCATTTTGAATGTAAAAAATGTTCAAAAAATTTTACAAACTCAGATGAATTAAATGACCATAAGAAAATACATAGCATGGAAAAATTTAATAAACAATGGTCTTGTGACATATGTAAAAAAAAATTTAGGTATGAGAAGTCACGTGATGACCATGTTATAGAACAACACAATGGACGTTTTCGATCACATTTATGTACAATTTGTGGTAAATCGTATAATAGAAATCAACAGTTGTTGGGGCATATGAAACAGGTTCATTCTGGTATAAAACCATATTTATGTAGTGTTTGTGGTAAAGCATTTTCCACAAAACGATTTTTGGAAGCTCATTCAAGAACACATACTAAAGAAAAACCATTTAAATGTGACGAATGTGGCAAAGGTTTTATTCATAAACCAAATATGATTGAACATAAGCGTATTCATAGCGGACTAAAACCACATGTATGCACTGAATGTGGTAAACAATTTACACATTTAACTGGTCTCAGGCAACATTCTGTATACCATACTGGAATTAAAAAATATAGTTGCTCTATTTGTGATAAAAAATTTTATTTTAAAAACAAATGTGACGATCATATGCGATTACATTCTGGTGAACTACCATACAGTTGTAAATATTGTGATAAAAAATTTCGAATTTGTAATGGTTTAAAGCGGCATACACGTGCATGTCGTGGTATTCGAGATTTTAAATGTGATGTATGTGAAAAAACATTTACAGAGAATTCGCATTTAAAGCAACATATGAAAGTTCATGAACGAGCGAAAAATCAAAGTAATAAGACTGTTGTATTTTCGAAAGTTGAGGACGTTTCATTATTAAGAAGTGCAGGACAATTGAAACAATATACAATTTATGAAAGTTTTATTTCATAA
Protein Sequence: MLNLYDTKIILDYEVLTTFYSEINDAEYEIIRMKIDYLMKNFTNKCEICPKSFSKCEYLQKHTLNQHGITKNEKIDSCLSGTDKIEGNEKNKIESMVIKIESNVIKDDCDSNEYDADVNTEDIEDIHIDDIEDIHGEDIEDKCGTDNDLKPLDTERNEYKCNICIVTFKTNQGYQNHLRAHRMGRRKKIQIYKCTKCSERFITSQRLTFHMKSNHNANIEDSIDENESIYKCTKCSRVFKRPQGLSIHLKSHENDQFILKDMYTTDGLLQCSVCSKTYASYKTLKKHAQSHNIEESEQLKENHFECKKCSKNFTNSDELNDHKKIHSMEKFNKQWSCDICKKKFRYEKSRDDHVIEQHNGRFRSHLCTICGKSYNRNQQLLGHMKQVHSGIKPYLCSVCGKAFSTKRFLEAHSRTHTKEKPFKCDECGKGFIHKPNMIEHKRIHSGLKPHVCTECGKQFTHLTGLRQHSVYHTGIKKYSCSICDKKFYFKNKCDDHMRLHSGELPYSCKYCDKKFRICNGLKRHTRACRGIRDFKCDVCEKTFTENSHLKQHMKVHERAKNQSNKTVVFSKVEDVSLLRSAGQLKQYTIYESFIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -