Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997757.1:10658680-10664552[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.7e-06 5.9e-05 23.7 6.4 1 23 272 294 272 294 0.99

2 12 6.7e-06 0.00014 22.5 3.2 1 23 300 322 300 322 0.98

3 12 7.3e-05 0.0016 19.2 0.8 1 23 328 350 328 350 0.98

4 12 0.0022 0.047 14.5 0.9 1 21 353 373 353 377 0.92

5 12 7.1e-05 0.0015 19.2 2.1 2 23 461 482 460 482 0.97

6 12 0.00015 0.0032 18.2 4.4 1 23 488 510 488 510 0.99

7 12 5.1e-06 0.00011 22.8 1.8 1 23 516 538 516 538 0.97

8 12 2.1e-05 0.00046 20.9 2.2 2 23 544 565 544 565 0.98

9 12 6.8e-06 0.00015 22.4 1.8 1 23 571 593 571 593 0.96

10 12 1.7e-05 0.00038 21.1 4.4 1 23 599 621 599 621 0.98

11 12 0.00048 0.01 16.6 8.0 1 23 627 649 627 649 0.98

12 12 0.0059 0.13 13.2 1.3 1 23 657 680 657 680 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.7e-06	5.9e-05	23.7	6.4	1	23	272	294	272	294	0.99
2	12	6.7e-06	0.00014	22.5	3.2	1	23	300	322	300	322	0.98
3	12	7.3e-05	0.0016	19.2	0.8	1	23	328	350	328	350	0.98
4	12	0.0022	0.047	14.5	0.9	1	21	353	373	353	377	0.92
5	12	7.1e-05	0.0015	19.2	2.1	2	23	461	482	460	482	0.97
6	12	0.00015	0.0032	18.2	4.4	1	23	488	510	488	510	0.99
7	12	5.1e-06	0.00011	22.8	1.8	1	23	516	538	516	538	0.97
8	12	2.1e-05	0.00046	20.9	2.2	2	23	544	565	544	565	0.98
9	12	6.8e-06	0.00015	22.4	1.8	1	23	571	593	571	593	0.96
10	12	1.7e-05	0.00038	21.1	4.4	1	23	599	621	599	621	0.98
11	12	0.00048	0.01	16.6	8.0	1	23	627	649	627	649	0.98
12	12	0.0059	0.13	13.2	1.3	1	23	657	680	657	680	0.93

Sequence Information

Coding Sequence: ATGGACATGAAGGTTGAAGTATTGCCTTCATTTGATAAAATATGTCGTACTTGTTTATCAGAAAATACAGATTTAAAAACATTTCTTGATACAAAACTATTAATTGATGAAATAGAAGTAGAAATGTCATGTGTATTGGAAATATGCACATCACTTCAGATACCTGGCGATGAAGGTTTTCCTACTGCAATTTGCAGTAATTGTGAAGAACGACTTTGTAATGCATATAATTTTCGGCAACAGGCAATCAAGTCTGAAGAAACACTTCGGAATTATAATAGTATAACGGCATTTCATACCATTAAAAATGAAAATGATGTTCAAGATGACTCCTCAGAAATTTATTTTCAAGAAAATTCAAATATTGAATATTTTGAAAACACTGATTCTGAAGACAAGAAACCTGGCGAAGTATCAGCTTTATCTTATGAAAAATCAGATTCTGACTATGAACCGCCACCAAATAGTTTGGATAGCGATCCAGATTATGAATTAATAAACTTGAAAAAAGGTAAGAGAAAAAAGACTGGAAAAAATACAAATAGAAATTTTTCAAACATAGTACAAAAACGCAATACAATGGAAATATATGATTCAGACACTGTAACAAAAGCTTTACAAGACACTAAAATAAAAAATAAGACTAAATTGGTTAAATGTCATCTTTGTGGGTATTTAGCGTTAAATCGTCGTGGATTGAGTTTGCATATTGCACACATTCATAAAGAAATGAAAAATCGATGGTGTTCCACTTGTTATATAGAAGTTGTTAATCTAGAAGAACATAAAAAATCGCATGAATGTGATAGAGCATTTAAGTGTACATTTTGTGATAAAAGTTTTCGCCATCAAGGCCATTTGACTGAACATATTCGTAGTCACTCAGGCGAACGCCCTCATAAATGTGATAATTGTAATAAAGGGTTTGTATCAGCGAGACATTTACGTATACATATGCGAGTTCATACTGGTGAAAAGCCTTATCAATGTGATATATGTTTAAAAAGATTTACTCAAAAAGGTGCTTTAGCATCACATTCTAAGAGACATGCCCGATATAAATGCAAGTTATGTGATTTAAATTTTACAAAGCTAAAATATTTAGCCCAACATATTCTAGAAACTAGTCATGGTGAAAATCAAGACAACAACGCAAAATCAGTGAATTTATTAAAAAATGAAACAATAGATCCAGTAGATGATATTCAAGACGAAAAAGATTTACCAAACATTGAAGATGAAGATTTTAATATTGAAAATGAAGAATCGAATTTAGAAAATTTAGAAGATAAAATTTGGGGAACTGAAAATATTCAAACTGGTCCAAAAAACATTGCAAGTGTCGTTGATAACGAAAATGAATGTTTAAATAAAGGCTCGGTTTGTCAAGTGTGCGATAAGAGATTTAGTTCTCATCCAAAATTACGATTACATATGAGATTGCATACTGGTGATACACCATATTCATGTAATTTTTGTAAAAAACGATTTTGTACCAGAGCTCAATTAGATGTCCATGTTCGAACACATACAGGGGAGAAACCTCATGTCTGTCATATATGTGGAAAAGGGTTTGCTCAATCTAGTGTTTTAAATACCCATATGAAATTGCATACTGGACGCCCGGAGCAATGTTCTATTTGTGAACAACGATTTTGTAGACCTGCTGAATTACGGCTTCATATGCGAAAACATACAGGTGAAAAACCATATCTATGCACTGAATGTGGTCAAACATTTATACAATCTAGTCATTTAGTTGAACATAAAAGAACGCACAGTGATGAAAGGCCATTTCCATGTCCACATTGTAAACGAGCTTTTAAACATAAAACAACATTACGATCGCATATACAAATTCATACTGGTGAAAAGCCTTTCAAATGTAAACATTGTTCGTATGCATGTCGTCAAAGTTACAGTTTGACACAACATATGCGTCAACATGCTGATAGCAACTTGAAACAGCACGAATGCCCAGCATGTTGGAAACGTTTTTCAAGTATTCATTTATTAAAGGCACATACTGAGAATGAACATGAAGTGATTATTGCCTGA
Protein Sequence: MDMKVEVLPSFDKICRTCLSENTDLKTFLDTKLLIDEIEVEMSCVLEICTSLQIPGDEGFPTAICSNCEERLCNAYNFRQQAIKSEETLRNYNSITAFHTIKNENDVQDDSSEIYFQENSNIEYFENTDSEDKKPGEVSALSYEKSDSDYEPPPNSLDSDPDYELINLKKGKRKKTGKNTNRNFSNIVQKRNTMEIYDSDTVTKALQDTKIKNKTKLVKCHLCGYLALNRRGLSLHIAHIHKEMKNRWCSTCYIEVVNLEEHKKSHECDRAFKCTFCDKSFRHQGHLTEHIRSHSGERPHKCDNCNKGFVSARHLRIHMRVHTGEKPYQCDICLKRFTQKGALASHSKRHARYKCKLCDLNFTKLKYLAQHILETSHGENQDNNAKSVNLLKNETIDPVDDIQDEKDLPNIEDEDFNIENEESNLENLEDKIWGTENIQTGPKNIASVVDNENECLNKGSVCQVCDKRFSSHPKLRLHMRLHTGDTPYSCNFCKKRFCTRAQLDVHVRTHTGEKPHVCHICGKGFAQSSVLNTHMKLHTGRPEQCSICEQRFCRPAELRLHMRKHTGEKPYLCTECGQTFIQSSHLVEHKRTHSDERPFPCPHCKRAFKHKTTLRSHIQIHTGEKPFKCKHCSYACRQSYSLTQHMRQHADSNLKQHECPACWKRFSSIHLLKAHTENEHEVIIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060998;
90% Identity: -
80% Identity: -