Ccar021909.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:50211011-50216220[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00018 0.0039 17.9 1.1 2 23 163 184 162 184 0.95 2 17 0.0025 0.054 14.4 7.7 1 23 191 214 191 214 0.97 3 17 0.066 1.4 9.9 5.9 2 23 248 270 247 270 0.91 4 17 1.1e-05 0.00023 21.8 0.5 3 23 281 302 280 302 0.98 5 17 3.5e-05 0.00075 20.2 5.4 1 23 308 331 308 331 0.96 6 17 0.0002 0.0043 17.8 0.4 1 23 337 359 337 359 0.99 7 17 0.00015 0.0033 18.2 0.5 1 21 365 385 365 386 0.95 8 17 0.00012 0.0026 18.5 2.4 1 23 441 464 441 464 0.97 9 17 1.3 27 5.9 0.7 2 16 471 485 470 492 0.71 10 17 0.00011 0.0025 18.6 1.1 1 23 497 519 497 519 0.98 11 17 5.2 1.1e+02 3.9 1.8 1 23 526 549 526 549 0.94 12 17 6.7 1.4e+02 3.6 0.2 1 10 557 566 557 577 0.79 13 17 0.0026 0.056 14.3 1.8 1 23 583 606 583 606 0.96 14 17 1.3e-05 0.00028 21.5 1.4 3 23 617 637 616 637 0.99 15 17 2.3e-05 0.0005 20.8 2.4 1 23 644 666 644 666 0.98 16 17 0.00049 0.011 16.6 3.3 1 23 672 694 672 694 0.99 17 17 4.8e-06 0.0001 22.9 0.8 1 23 700 722 700 722 0.96
Sequence Information
- Coding Sequence
- ATGGAAAAATCTTCTGAAACGGAAAATAGTTATGAAGAAAAATGTCGAATCTGTATGCTTAATTATAACGAAATGACAACTGTTCAAGTACTTAATAACTCATTTGATATGCAATGTTTATTGATTTTCCTTGGGATTGAGGTAGCAGAAAATAAACCACTATTGAATTTAATTTGTAAGAATTGTTCGTGCCGATTGGACGAAATTCTAAATTTAAAGAAACAATGTGAAATCTCATATAATATTTTAAGCCAAATATCCGACATTAGAACCGAAAATAACAATCCACCTTTAAAATATGAAAATAATGAGTCAGAGACGGAAATTAATAAAGACGAAACATTTAACACAATTTTCGAAACTGATATTGATAATAACTCATTAAAATCGTTCAATTCGGATATATCTCAAAATGATGATAAAGAATCAAATGAAACTATAAAAAAATTTTCTGATGTCGAAACTATAGGGGAAAACAATTCATTGAATTGTAAAGTTTGTAATAAATCTGTAGCAAATAAACGTAGTTTACGACGGCATCAATTGCTACATCAAAATAATAAACCAACATATTTCTGTTCGCATTGTAAGAAGTTTTATAGTACCTCTAGTAATTTATCGTATCATTATAAGAAATTCCATAGTGTAAATAAATTAACACGAACTGCTTGTAAATTATGTTCTAAATCGGTATGGAACATTGGTGAACATATGAAATTCACTCATGGTGACATTAAACTTCAGTGTTCGTTTTGTGAAAAGAAATTTAAATCACGTCATGGTTTACGTGTCCATTTTGAAAACTGTCATGAAAATGTTGAGAACAATTTTAAATCATTATGTTCGATATGCGGTAAAGCGTTTCGTACGAATGGTGATTTATCAAGTCATTTACAAACAAAACATAATGATAAACGTAATTTTAGTTGTAAATACTGTGAGAAAAAATTTAAAACACGCAGTCATTTAACATCACACGAAAAAGTATCACATTTAAATTATCGTCCGTACGAATGTGAAATATGTTCAAAATCTTTTGCTTCCAAACAAATTCTTTTAAATCATGTACGAACACATACTGGAGAACGGCCATTTGTTTGTACAATTTGCTCAAAAGCTTTTGGACATACTTCATCGTTACGTAATCATATCAATTCAGTAAAAGAAGCAAATCGTGGTGAAACTAAAGAAAATATTGAAGAAATGTTAAGTAAAATTGATAAAACTAGTAAAAAATCAGTATCATGTAAATTATGTGGAAAAACAATGCCGGAACGAACACTTTATGGACATTTGCGATATCATCAACAAGGCACTCGACATAAATGCGAACATTGCTCAAAAGCATATCGTAAACCCGGTGAATTGGCAAAACATTTACAGCGTGTCCACAAAACAAAAAGCGTTATCAAATGTAATGTTTGTAATAAAACGTTTCTAATTCAAGCACAATTAGATTTTCATAAAAAAACACATTTTAATAAAAAATATCCATGTGACATTTGTGGAAAAGAGTGTTATCTAAGTGCAAATTTGAAACGACATAAGGAGACACATACAAAACGTGAGAAATCATTTTTCTGCTTACATTGTGATTCAACATTTTTGGGTGAAGTATCATTAAAAATACATGTTAAGAAATATCATTCGGATACACCACAAGAGAAGCATGCGTGCCCACTTTGTGGAAAAATGGTTTATAATGTACGACTTCATACATTGAATACACACTCTAATGTTAGACCGCATAAGTGCGATCAATGTGATAGAGCATTCGGGTTCAAATCAGTTTTATTAAAACATGTACGGGAAAAACATTTAGGTATTCAACAAGAGTATAAAGCATTATGCCCGTCATGTGGAAAATCATGTCCGTCACAGGGTGATTTGCGTAAACATTTACGTACCCACGCACAAGATCGTCAACTTTATGATTGCCATTTATGTGGTAAAAAATATAAATCCCGTGAAGGTTTGCGTAATCATTTAAAAGTACATTCAGGTTTACGGCCATATGTTTGCACGTACTGTACAAAAGCTTTTCATACAAGTACAATATTGAAAAATCATATACGAACACATACTGGTGAACGGCCGTTTGCATGTCATATTTGTGGAAGAGCGTTTACACAAAAAGTATCTTTACAAACTCACGTTAAAGGTCATAATGATTGA
- Protein Sequence
- MEKSSETENSYEEKCRICMLNYNEMTTVQVLNNSFDMQCLLIFLGIEVAENKPLLNLICKNCSCRLDEILNLKKQCEISYNILSQISDIRTENNNPPLKYENNESETEINKDETFNTIFETDIDNNSLKSFNSDISQNDDKESNETIKKFSDVETIGENNSLNCKVCNKSVANKRSLRRHQLLHQNNKPTYFCSHCKKFYSTSSNLSYHYKKFHSVNKLTRTACKLCSKSVWNIGEHMKFTHGDIKLQCSFCEKKFKSRHGLRVHFENCHENVENNFKSLCSICGKAFRTNGDLSSHLQTKHNDKRNFSCKYCEKKFKTRSHLTSHEKVSHLNYRPYECEICSKSFASKQILLNHVRTHTGERPFVCTICSKAFGHTSSLRNHINSVKEANRGETKENIEEMLSKIDKTSKKSVSCKLCGKTMPERTLYGHLRYHQQGTRHKCEHCSKAYRKPGELAKHLQRVHKTKSVIKCNVCNKTFLIQAQLDFHKKTHFNKKYPCDICGKECYLSANLKRHKETHTKREKSFFCLHCDSTFLGEVSLKIHVKKYHSDTPQEKHACPLCGKMVYNVRLHTLNTHSNVRPHKCDQCDRAFGFKSVLLKHVREKHLGIQQEYKALCPSCGKSCPSQGDLRKHLRTHAQDRQLYDCHLCGKKYKSREGLRNHLKVHSGLRPYVCTYCTKAFHTSTILKNHIRTHTGERPFACHICGRAFTQKVSLQTHVKGHND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -