Ccar010947.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997755.1:3042379-3044169[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1e-06 2.3e-05 25.0 3.2 1 23 103 126 103 126 0.97 2 13 0.00087 0.019 15.8 1.4 1 23 146 168 146 168 0.97 3 13 0.67 14 6.7 0.1 1 12 173 184 173 189 0.90 4 13 0.17 3.7 8.6 5.6 1 23 275 297 275 297 0.98 5 13 0.0005 0.011 16.6 1.8 1 23 303 325 303 325 0.97 6 13 1.8e-05 0.00039 21.1 4.2 1 23 332 354 332 354 0.98 7 13 8.7e-06 0.00019 22.1 1.8 1 23 360 382 360 382 0.98 8 13 1.6e-05 0.00035 21.2 5.9 1 23 388 410 388 410 0.97 9 13 8.1e-05 0.0017 19.0 0.5 1 23 416 438 416 438 0.97 10 13 4.7e-06 0.0001 22.9 0.6 1 23 444 466 444 466 0.98 11 13 4.8e-06 0.0001 22.9 2.9 1 23 473 495 473 495 0.98 12 13 5.3e-05 0.0012 19.6 1.7 1 23 501 523 501 523 0.98 13 13 1.6e-05 0.00035 21.2 1.1 1 23 544 567 544 567 0.97
Sequence Information
- Coding Sequence
- ATGTCCAATCATTCAGTTTTTGATAAACCTCTACAAGATATTGGTGAAGAAATTAAAACGGAACAAGAATTACATCCAGAAACAGATTTAATGGTTAAAGAAGAAATACGAGAAGAAAATGTTTCAGTGGATCTTCAACGAATTCAAAATGAAGACAAACTTTTATCAGATGAAACAGATAAAATATTATCCACGGAAATCAGTTCGGTTGACCATAAACGAAATCTAAACCGGGGAAAGCATAAAAAATTGTCAAAGACATGTAATTTACGTGAACATAAACTTCTTCATGTTAAAGAAAACAGTTTTTCGTGTGATTTGTGCGGTAAAAAGTTTACTCGACAAAGTAGTTTAACGCAACATAAACGAAAACAACACGCCCAAACTAATTCATCCGATATTCAAGATAATAAACAAGCTGAAATAAACGAGGTTTTTCCATGTAATGTTTGTGAAAAAATGTTTGAATCTGAATTTAATTTCATTACACATAAACGTTTTCACACTGATGAGAGTTTTTCATGTGAGCTTTGTGAAAAGGCTTTTACGCATTTATTGGAACATCAAATATTGAAAATTGAAGATAAACCGTTCTATATTAAAATTGAAAAACAATTTCATATTGATATAAAACTCAAAGAAGAAGCACCGGATGAAAGTGTTCACTTGGAAGAAATCGATGAAAAGAATTTTTCTTACGAGTCGGATGACAATATTTCAGTGAAAAAGGAAGAAATTAGTGAGGAAAAAAATAAATCTTACGAGTTAAAAGAAAATATTTCAGTGAGTGAAATAAGTGCAGTGAATTCAAAAGAAAAACCATTTTCATGTAATTTTTGTGAGAACAAATATCCAACAAAATTTCATTTGGATCAACATAAGCGAAAACATACCGGAGAAAAACCCTTCTCATGTGAGATATGTAGTAAATTGTTTCATTCGAAAGCAAATTTAGTTAAACATCGTTTAATTCACACCGAAAAGGATAAATCATATTCCTGTGAAGTTTGTAATAAAAGTTTTAGCCAACAACGTTATTTGCACCAACATAAACGAGTTCATTTGATTGGGAAAAATTTTTCGTGTGATATTTGTGGAAAATCATTCGGTATCAAGAGTTGTTTGGTCAACCATCAACGAACTCATACCGGAGAAAGACCATTCGCATGTGATATTTGTGATAAACGATTTTCCCGGCAGTGTCATTTACGTCGACATAAACGAGCTCATACTGGTGAAAAACCTTATCCATGTGATATTTGTGGTAAACGATTTACAACCAGAGACATTTTAAAAGTGCATAAACAAAATCATACCGGGGAAAAACCGTTTTCATGTGAAGTTTGTGGAAAATCATTTCAAGCAAAATCAAATCTACTTACCCATCAAAAAATTCATACCGAAAAAGAAAAATCATATTTCTGTGATGTTTGTAATAAAAGTTTTAGCCAACAACGTTATTTAAACGAACATAAACGAACTCATTCGACGGAAAAGAATTTTTCTTGTGATATTTGTGGTAAAACTTATGGTGGTAGAACGTGTTTGGTTCGACATTTACGAACTCATGCTGCTGTTAAACCACTTGCACAGAAAATTAATAAAAGAAATCGTACCGATGGAAAACGATTTTCATGTGATATTTGTGAGAAATCATTTAATCGGAGAAAATTATTAGTCGTACATCAACAAAAAAGTCACAATAGTGATAAAATTTTTCCTGTTGATAGTTTTGTGTTTAATCTTCCATTAAGCGCACCTGATTTAACAGGCACAACGCGGATTTTCTAA
- Protein Sequence
- MSNHSVFDKPLQDIGEEIKTEQELHPETDLMVKEEIREENVSVDLQRIQNEDKLLSDETDKILSTEISSVDHKRNLNRGKHKKLSKTCNLREHKLLHVKENSFSCDLCGKKFTRQSSLTQHKRKQHAQTNSSDIQDNKQAEINEVFPCNVCEKMFESEFNFITHKRFHTDESFSCELCEKAFTHLLEHQILKIEDKPFYIKIEKQFHIDIKLKEEAPDESVHLEEIDEKNFSYESDDNISVKKEEISEEKNKSYELKENISVSEISAVNSKEKPFSCNFCENKYPTKFHLDQHKRKHTGEKPFSCEICSKLFHSKANLVKHRLIHTEKDKSYSCEVCNKSFSQQRYLHQHKRVHLIGKNFSCDICGKSFGIKSCLVNHQRTHTGERPFACDICDKRFSRQCHLRRHKRAHTGEKPYPCDICGKRFTTRDILKVHKQNHTGEKPFSCEVCGKSFQAKSNLLTHQKIHTEKEKSYFCDVCNKSFSQQRYLNEHKRTHSTEKNFSCDICGKTYGGRTCLVRHLRTHAAVKPLAQKINKRNRTDGKRFSCDICEKSFNRRKLLVVHQQKSHNSDKIFPVDSFVFNLPLSAPDLTGTTRIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -