Ccar007603.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Chrysoperla carnea
Gene Symbol
-
Assembly
GCA_905475395.1
Location
FR997757.1:33489017-33491655[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0021 0.046 14.6 2.3 1 23 152 174 152 174 0.98
2 16 4e-05 0.00087 20.0 1.6 1 23 186 208 186 208 0.98
3 16 0.021 0.46 11.4 0.8 1 23 214 236 214 236 0.98
4 16 0.02 0.43 11.5 0.4 1 23 268 290 268 290 0.98
5 16 5.9e-05 0.0013 19.5 0.4 1 23 302 324 302 324 0.98
6 16 0.0014 0.031 15.1 1.3 1 23 332 355 332 355 0.94
7 16 0.0006 0.013 16.3 0.4 3 23 357 377 355 377 0.96
8 16 0.00016 0.0034 18.1 0.8 3 23 380 400 379 401 0.95
9 16 0.013 0.29 12.0 2.9 1 23 542 564 542 564 0.97
10 16 0.00023 0.0051 17.6 0.8 1 23 576 598 576 598 0.98
11 16 0.0011 0.025 15.4 1.9 1 23 604 626 604 626 0.98
12 16 0.00064 0.014 16.2 0.3 1 23 656 678 656 678 0.97
13 16 6.2e-05 0.0013 19.4 0.8 1 23 690 712 690 712 0.98
14 16 0.00071 0.015 16.1 3.9 1 23 720 743 720 743 0.95
15 16 0.0081 0.17 12.8 0.5 3 23 745 765 743 765 0.96
16 16 0.0054 0.12 13.3 0.7 3 23 768 788 767 789 0.95

Sequence Information

Coding Sequence
ATGTCAAAATTAGAAAAAGGTATAATGAAAGAGAAAAAACTTCCAGACGATGTGGAAAATTCAGTAATAGTTAAGGATGAAAACGTTAAAACTGAACAAATAAATTATTGGTGTCATGATGAAAATTTACAGTATATAAAAGATGAAAACATTAAAATTGAAAAATTACATTCAGAATTGTTAATTAAAGATGAACACAATTTTTCAGTAATCGACGCTAATACTTTAGTATTAAAAGAAAACTTTGGAACTGAAGAAATAAATTATTCTTTTCAAGATGAAAACAATTTATCATGTATTAGTGATAAAAATATCAAAACCTGCCTTGAACAATTTCATTCAGAAGTTATTGTTGAAAATGAAACCAAAACTGATACAAAATTTGGCTTTGCTAAGCATGACAGTTTAGTTGAACATGAGCGGATCCATAATAATTATACAGAATTCATTCCGTATTCATGTGATGTTTGCAATCTCAAATTTGACTCACAAAAGCGTTTGAATAGACATAAAAAACTTCATACTATAAGAAAAAATAAAAATGATGAAAAACTATATTCTTGTGATGTTTGCAATATTAAATTTAATAATCAAAGCACATTATTTCAGCATAAACGAATTCATAGCGGAAGGAAACCTTTTACGTGTGATGTTTGTGAAAAGACATTTGCTTGGGAAGTTAGTTTACTTCATCATAAACTAACGCACAATGGAAAAACACAATATTCTAGTTGTAACGTAAAACCCGTTGAGCAAATCAGTTCAGTTGAACACAAACGAATTCATAATGCAGAAAAATCATATTTTTGTGATGTTTGTAACGATAAATTTGACCAGGTAAGTAGTTTAATCGAGCATAAAAGAATTCATGATAGAGAAAAAAATGAATATGATGAAAAACTATATTCCTGCGATATTTGCAACACAAAATTTGACCAGGAAAATAGTTTGATTGCACATCAACGACTTCACAGCGGAGAAAAGGAAAAACGTCATACGTGTAATGTTTGCAATAAACCATTTGCTTATAAATGGTTATTACTTCAACATAAACAACACACACATTTATGCGATGTTTGTGATAAAGAATTTGTTTTTAAAAATAGTTTAATTGAACATAAACGGATCCATAATATTTGTGATATTTGTGATGCAACATTTGTTTTTAAAAGCACTTTGATTGCTCATAAACGGATGCATCATATTGGTAGTGATCATGAACACATCGAGGGGAGGGAAACTGACTTGAATTGCCCTCCCCTCGATTCTGTATTAAACATTTGTCACGATGAAAATGTACCGTATATTAAAGATGAAAATATTAAAATTGAAAAATTACATTCAGAATTGTTAATTAAAGATGAAGATAATTTTTCATTTACTGTTGCTAATACTTTAGTATTAAAAGAAAACTCCGAAACTTCAGAAACAAATTGTTCTTTTCAAGAGAAAAACATTATACCATGTATTAGTGATGAAAACTTTAAAACAGAACAATTTCATTCGGAACATATTGTTGAAGATGAAACTAAAACATTTAATGACGAAAAATTTGATAAACAAAGCAATTTAGTTGAGGATAAGTCGATTTTGATTCATAATAACTGTACAGGGTTCGTTCCGTTTTCATGTGATTTTTGCAATCTTAAATTTGACTCACAAAAGCGTTTGATAAGACATAAAAAACTTCATACTACAAGAACAAATAAAAATGATGAAAAACTATATTCTTGTGATGCTTGCAATATTAAATTTAATAATCAAAGCACATTAATTCAGCATAAACGAATTCATAGCGGAAGGAAACCGTTTACGTGTAAAATTTGTCAAAAGACATTTACTTGGAAAGTTAGTTTACTTAATCATAAACTAACGCACAACGGGAAAACACAATATTCTAGCGATGTTTCTAATGTAAAACTTGTTGAACAAAGCAGTTTAGTTGATCATAATGGGGAAAAACCATATTCTTGTGATGTTTGTAACGAAAAATTTGACCAGGAAAGTAGTTTAATTGAGCATAAAACAGTTCATGATGCAGAAACAAATGAATATGATAAAAATCTATATTCCTGTGATGTTTGCAACATAAAATTTGACCAGAAAAATAGCTTGATTCAACATCAACGACTGCATAACGGGGAAAAGGAAAAACCTTTTGCGTGTAATGTTTGCAATAAAAAATTTGCTGATAAACGATATTTATTTCAACATAAACGACACACACATTTATGCGATGTTTGTAACCAAGAATTTGTTTTTAGAAACAGTTTAATTGAACATAAACGAATTCATAATATTTGTGATATTTGTTTTGCAACTTTTGTTTTTAAAAGCACTTTGATTGCTCACAAACAAATTCATCATATTGGTAGTGGTCAGGACGTATCTAGCGCAGGGCAGCTGCCTTGA
Protein Sequence
MSKLEKGIMKEKKLPDDVENSVIVKDENVKTEQINYWCHDENLQYIKDENIKIEKLHSELLIKDEHNFSVIDANTLVLKENFGTEEINYSFQDENNLSCISDKNIKTCLEQFHSEVIVENETKTDTKFGFAKHDSLVEHERIHNNYTEFIPYSCDVCNLKFDSQKRLNRHKKLHTIRKNKNDEKLYSCDVCNIKFNNQSTLFQHKRIHSGRKPFTCDVCEKTFAWEVSLLHHKLTHNGKTQYSSCNVKPVEQISSVEHKRIHNAEKSYFCDVCNDKFDQVSSLIEHKRIHDREKNEYDEKLYSCDICNTKFDQENSLIAHQRLHSGEKEKRHTCNVCNKPFAYKWLLLQHKQHTHLCDVCDKEFVFKNSLIEHKRIHNICDICDATFVFKSTLIAHKRMHHIGSDHEHIEGRETDLNCPPLDSVLNICHDENVPYIKDENIKIEKLHSELLIKDEDNFSFTVANTLVLKENSETSETNCSFQEKNIIPCISDENFKTEQFHSEHIVEDETKTFNDEKFDKQSNLVEDKSILIHNNCTGFVPFSCDFCNLKFDSQKRLIRHKKLHTTRTNKNDEKLYSCDACNIKFNNQSTLIQHKRIHSGRKPFTCKICQKTFTWKVSLLNHKLTHNGKTQYSSDVSNVKLVEQSSLVDHNGEKPYSCDVCNEKFDQESSLIEHKTVHDAETNEYDKNLYSCDVCNIKFDQKNSLIQHQRLHNGEKEKPFACNVCNKKFADKRYLFQHKRHTHLCDVCNQEFVFRNSLIEHKRIHNICDICFATFVFKSTLIAHKQIHHIGSGQDVSSAGQLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-