Ccar021514.1
Basic Information
- Insect
- Chrysoperla carnea
- Gene Symbol
- -
- Assembly
- GCA_905475395.1
- Location
- FR997754.1:6137995-6140497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.7e-05 0.0017 19.1 0.4 1 23 161 183 161 183 0.96 2 13 2.6e-05 0.00057 20.6 2.2 1 23 188 210 188 210 0.96 3 13 1.1e-05 0.00023 21.8 3.6 1 23 281 303 281 303 0.98 4 13 0.00014 0.0031 18.3 0.4 1 23 309 331 309 331 0.98 5 13 0.0019 0.041 14.7 0.3 1 23 337 359 337 359 0.96 6 13 8.4e-05 0.0018 19.0 0.1 1 23 365 387 365 387 0.98 7 13 3e-06 6.5e-05 23.5 0.6 1 23 393 415 393 415 0.98 8 13 2.6e-05 0.00057 20.6 1.5 1 23 421 443 421 443 0.96 9 13 7.3e-05 0.0016 19.2 0.6 1 23 449 471 449 471 0.96 10 13 0.00016 0.0034 18.1 3.3 2 23 481 502 480 502 0.95 11 13 7.1e-05 0.0015 19.2 1.4 1 23 513 535 513 535 0.98 12 13 4.1e-05 0.00089 20.0 0.8 1 23 541 563 541 563 0.97 13 13 4.4 95 4.1 9.9 1 21 569 589 569 590 0.94
Sequence Information
- Coding Sequence
- ATGAACTATAAATTCTACAAATTTTCAGGGACAGGTGCGCTAATGCTTCAGTACATAGCGATCGTTCTCCTTCTTTATAACCTTCATGGATACCACTGTCAAGTGTCGAGTATCGGATCGGTTCTCCTTGTTGACGTTGTGATTTTAACCAAGAATTATATTATTTTGTTTATTCTGAAATTAACAATGGACGTTGAAAACTTAAGTTCCGAATTAATTCCTAAAGGCGATTCAGGAATGTTGAACGAATTCGATTCAAATGACGAAGAAAATGAAATGGTTGAGGATATGGGGACACCACAAAACGATAGTATTTCTTTTGAACAAGTAATTATCAAAGGTGAAGAATCATATTATGATGAAATGATCGAATTAAGTGATTCAGAAAATGATGAACCGGTCGAAATAAGTGATTCAGAAAATGAAATTATAAATAATGTAATGGTTGAAATAAGTGATTCAGAAAATGATGAGGAAAGTTATTCGTGTAGTGTTTGTAATGAAACATTTACAACACAAACTGATTTATTTGAACATGAAGAAATACACAAGAAAAATATATTTTTATGTGATGTTTGTAATAAAACATTCATTAATCGAAAACAATTGGATCGGCATAAACGAACACATACTAGAAAAAAATCGAAAAAATCATTCAGTAAATCAAGTGATCGTGAACAAATTCATTCTAACAAAAAATCAAATGGTGATTCTTGTGATGATGAACAAATTGATAATTCGATTCGTACCAAAGAAAAAGCTTCTTGTTCTTCATCTGTATCTGGCGGTGATATTGATAAATCCAAGAAAAACGAAGATAAATCAAGTGAAGAAAAACCATTTATATGTGATAAGTGTGGTAAAACGTATACGAGTCGACGTAAGTTGACTAGACATAAACGAAGTCATAATGAAGAAAGACCTTTCTCATGTGATGTTTGTGGCAAAACATTTACGGATTTAAGTATTTTAAAAGGTCACAAACGTATTCACACTGGAGAAAAACCATATTTATGTGATATTTGTGCAAAACCATTCATCAGTCGAAGTAGAATGGTTCGACATAGACGAATTCATACGGGAGAACGTTCATATGCGTGTGATGTTTGTGGGAAAACGTTCACCGAAGGTAGTAGTTTAGTTTTACATAAACGTATTCATACCGGTGAGAAATCATATGCATGTGATGTGTGTGGTAAAACATTCTCATTGAAAAGTTCACTAGATCGACATAAACGAATTCATACGGGAGAGAAACCGTATTTATGTGATGTGTGTTTTAAAACATTCCGTCAACAAAGTAGTTTAGTCACACATAAACGGATCCATACGAAAGAACGACCGTATCCATGTGATCTGTGTGCGAAATCATTTAGCAGTTCAGGGAACTTAGTTAAACATAAACAGTTCCATGCTAGAGAGAACAAACCATGCCCATGTTCGTGTGATGTTTGTGATAGAACATTTTCGAATCGACGGTCGTTAAGTAGACATAAACTGGTTCATTCGGGACAGTTTAAATCTCTGCATAAATCTTTTACATGTAATGTTTGTAATAAAACGTTTACTAAACAAAGTGTATTCGTTATACATGAACGTATGCACACGGGAGAAAGACCGTTCTCGTGTACTGTTTGTGATAAAAAGTTTGCGAGTGGAAGTAATTTAAGTAAACATAAATTAATTCATACGGGTGAAAAACGTTATTCATGCGATTACTGTCATAAAGCATTCTTTGAGCGTTGTAAATTTAAGAAACATAAATGTTCAGTTACTAGAACAGAATCTGTACCATTGGATATGTCTCATATTTATAGAATCAAACCGGAGTATCACAATAACGATTATCTGTACAGGACGGACGGACAAGCAATTACCTCAACAACAAGTCAAAACAAACAATTGACTGACTGA
- Protein Sequence
- MNYKFYKFSGTGALMLQYIAIVLLLYNLHGYHCQVSSIGSVLLVDVVILTKNYIILFILKLTMDVENLSSELIPKGDSGMLNEFDSNDEENEMVEDMGTPQNDSISFEQVIIKGEESYYDEMIELSDSENDEPVEISDSENEIINNVMVEISDSENDEESYSCSVCNETFTTQTDLFEHEEIHKKNIFLCDVCNKTFINRKQLDRHKRTHTRKKSKKSFSKSSDREQIHSNKKSNGDSCDDEQIDNSIRTKEKASCSSSVSGGDIDKSKKNEDKSSEEKPFICDKCGKTYTSRRKLTRHKRSHNEERPFSCDVCGKTFTDLSILKGHKRIHTGEKPYLCDICAKPFISRSRMVRHRRIHTGERSYACDVCGKTFTEGSSLVLHKRIHTGEKSYACDVCGKTFSLKSSLDRHKRIHTGEKPYLCDVCFKTFRQQSSLVTHKRIHTKERPYPCDLCAKSFSSSGNLVKHKQFHARENKPCPCSCDVCDRTFSNRRSLSRHKLVHSGQFKSLHKSFTCNVCNKTFTKQSVFVIHERMHTGERPFSCTVCDKKFASGSNLSKHKLIHTGEKRYSCDYCHKAFFERCKFKKHKCSVTRTESVPLDMSHIYRIKPEYHNNDYLYRTDGQAITSTTSQNKQLTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -