Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997754.1:23119835-23128750[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.2e-05 0.0011 19.6 0.7 1 23 206 228 206 228 0.99

2 12 0.00094 0.02 15.7 0.1 1 23 234 256 234 256 0.98

3 12 0.00016 0.0034 18.1 4.4 1 23 262 284 262 284 0.98

4 12 0.00058 0.012 16.4 1.4 3 23 298 318 296 318 0.95

5 12 0.0049 0.11 13.4 1.4 2 23 325 346 324 346 0.97

6 12 6.2e-06 0.00013 22.5 1.8 1 23 352 374 352 374 0.98

7 12 3.1e-06 6.7e-05 23.5 0.2 1 23 380 402 380 402 0.96

8 12 3.2e-05 0.00069 20.3 0.1 1 23 408 430 408 430 0.99

9 12 3.5e-07 7.5e-06 26.5 3.0 1 23 436 458 436 458 0.98

10 12 1.6e-05 0.00035 21.2 2.7 1 23 464 486 464 486 0.97

11 12 7.1e-06 0.00015 22.4 0.7 1 23 492 514 492 514 0.97

12 12 1e-05 0.00022 21.9 0.5 1 23 520 542 520 542 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.2e-05	0.0011	19.6	0.7	1	23	206	228	206	228	0.99
2	12	0.00094	0.02	15.7	0.1	1	23	234	256	234	256	0.98
3	12	0.00016	0.0034	18.1	4.4	1	23	262	284	262	284	0.98
4	12	0.00058	0.012	16.4	1.4	3	23	298	318	296	318	0.95
5	12	0.0049	0.11	13.4	1.4	2	23	325	346	324	346	0.97
6	12	6.2e-06	0.00013	22.5	1.8	1	23	352	374	352	374	0.98
7	12	3.1e-06	6.7e-05	23.5	0.2	1	23	380	402	380	402	0.96
8	12	3.2e-05	0.00069	20.3	0.1	1	23	408	430	408	430	0.99
9	12	3.5e-07	7.5e-06	26.5	3.0	1	23	436	458	436	458	0.98
10	12	1.6e-05	0.00035	21.2	2.7	1	23	464	486	464	486	0.97
11	12	7.1e-06	0.00015	22.4	0.7	1	23	492	514	492	514	0.97
12	12	1e-05	0.00022	21.9	0.5	1	23	520	542	520	542	0.98

Sequence Information

Coding Sequence: ATGGAATTAAATCCCTTACAAGCTCCACTCCAATTAGAACGAATTTGTAGAGCTTGTTTATCTGAGAGAAGTGATATGAGACCACTTTTTGGCGCTTGTCTTGACGAAATGCTTGTATCTTTTGCAGGTATTCAAGTTGCTGAAGGTGATGGTTTACCAAATTTAATGTGTGTTCAATGTATTTTACAATGTAGTCGAGCTTATACGTTTAAACAACTTTGTGAAAAGTCTGATAGAACTTTACGGCAGTATACTTCACCAGAATTTCAGGCACAGCTAGCAGAAACTTTACAAGAAGCTACACAACCAACCGAAGAAAATAAAGATGAGCTTGATGATCAAGTCGTGTCTTTTAGCGCCGATCAAATCACGAATGTGGTTGTTCAAATAGCAAATATTGAAAATGATGATACTCAACAATTGACCGAGGAATATGTAGAATATGAGATGCCAGTCAAACAGGAATTATATGAAATTAAATTAGAGGGTGATTTAAACCAACATAATATAACAACCGTTACAAATAATCAACAAATTGATGATAACCATTGCAACGAAGTGGTTATTTTAGAAGAAAATCATCAACCATCAAATCAAGATGTAACGAAGCAGCGGTATCAATGCAATAAATGTAATGAATCGTTTGCATTACGAGTCGATTATAAGGTTCATATGATGTCCCATCCAAAAGAATTAGATTATGTTTGCGAGGTATGTAACAAAGCATTTCCCGAAGCACGCATTTTGAAACGTCATTTAAAAATTCACATGGAAAATAAACCGCACAAATGTGATAAATGTAACATGTCATTCGCTGAAAGTTCCAATTTAAGTAAGCATAAAAAGAAACACACCGGTGAACTGCGTAACATAAAAGGAAAGCCACATTTGTGTTCAGTTTGTGGGCGTGCATTCAAATGGGCGTCAAGTTTATCCAAACATATGAAATACCATACAGGACATAAATTATTAAGTTGTAAACATTGTGCCAAACAATATGTAGAAGCGAGAAGTTTACGAATACATTTACGTTCGCACACTGGAGAACGGCCTTTTGTTTGTACAATTTGTCAGAAAGGTTTTACACAGTTGTGTAACTTGGAGAAACATGTTCGTATTCATACTGGAGAAAAACCGTATTTATGTAATATTTGCGGGAAAGGTTTTACACAATCGGGATATGTGGCAATTCATATGCGTACGCATACTGGGGAAAAACCTTACAAGTGTTTGATTTGTGGGCGTGCTTTTGCTGGATCGAATACCTTAGCAATACATGTTCGTACACATACAGGTGAAAGACCTTTCCGTTGTAACATATGTGGTAAATCATTCAGTCGTCATGAATCATTAAACATCCATACTAGATCGCACACAGGACATAAACCACATGTATGCGGTGTTTGTCATAAAGCATTTGCATCATCAGGTCATCTAAATGGTCATATGCGTAGCCATACTGGTGACAAACCACATGAGTGTGTTGCATGTGGTAAACGATTTGCTGGTTCTAGTAGTTTAAAAGTACATATGCGTACACATTCTGGTGAAAAACCATATGAATGTAGATTTTGTGGTAAAAGTTTTGCACAATCTGGTGCGTTAACGACACATGTCTATACTCATACAACAATTAAAGGGAGATTTAATAAGTCGGATACAACGGAGGAATTACCCACTATAACTTTGCCAGGTGAAAATGTTCAAGTACCAACGATATCCAGTATATAA
Protein Sequence: MELNPLQAPLQLERICRACLSERSDMRPLFGACLDEMLVSFAGIQVAEGDGLPNLMCVQCILQCSRAYTFKQLCEKSDRTLRQYTSPEFQAQLAETLQEATQPTEENKDELDDQVVSFSADQITNVVVQIANIENDDTQQLTEEYVEYEMPVKQELYEIKLEGDLNQHNITTVTNNQQIDDNHCNEVVILEENHQPSNQDVTKQRYQCNKCNESFALRVDYKVHMMSHPKELDYVCEVCNKAFPEARILKRHLKIHMENKPHKCDKCNMSFAESSNLSKHKKKHTGELRNIKGKPHLCSVCGRAFKWASSLSKHMKYHTGHKLLSCKHCAKQYVEARSLRIHLRSHTGERPFVCTICQKGFTQLCNLEKHVRIHTGEKPYLCNICGKGFTQSGYVAIHMRTHTGEKPYKCLICGRAFAGSNTLAIHVRTHTGERPFRCNICGKSFSRHESLNIHTRSHTGHKPHVCGVCHKAFASSGHLNGHMRSHTGDKPHECVACGKRFAGSSSLKVHMRTHSGEKPYECRFCGKSFAQSGALTTHVYTHTTIKGRFNKSDTTEELPTITLPGENVQVPTISSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01060956;
90% Identity: iTF_01060956;
80% Identity: -