Basic Information

Insect: Chrysoperla carnea
Gene Symbol: -
Assembly: GCA_905475395.1
Location: FR997756.1:75511181-75513612[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00065 0.014 16.2 0.6 1 23 87 109 87 109 0.98

2 15 1.5e-05 0.00032 21.4 3.4 1 23 115 138 115 138 0.97

3 15 7.5e-05 0.0016 19.1 1.1 1 23 143 165 143 165 0.97

4 15 1.9e-05 0.0004 21.0 0.7 1 23 171 194 171 194 0.97

5 15 0.00014 0.003 18.3 1.2 1 23 199 221 199 221 0.97

6 15 0.00038 0.0082 16.9 2.2 1 23 233 255 233 255 0.98

7 15 0.00043 0.0094 16.7 0.9 1 23 261 283 261 283 0.96

8 15 0.0013 0.027 15.3 2.5 1 23 289 312 289 312 0.96

9 15 0.00017 0.0037 18.0 1.8 1 23 317 339 317 339 0.98

10 15 8.3e-05 0.0018 19.0 2.5 1 23 345 367 345 367 0.98

11 15 0.0075 0.16 12.9 1.1 1 23 378 400 378 400 0.98

12 15 0.035 0.77 10.7 2.5 1 23 406 428 406 428 0.94

13 15 4.5e-06 9.7e-05 23.0 0.4 1 23 434 456 434 456 0.99

14 15 3.3e-05 0.00071 20.3 0.6 1 23 462 484 462 484 0.98

15 15 4e-05 0.00087 20.0 1.8 1 23 490 512 490 512 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00065	0.014	16.2	0.6	1	23	87	109	87	109	0.98
2	15	1.5e-05	0.00032	21.4	3.4	1	23	115	138	115	138	0.97
3	15	7.5e-05	0.0016	19.1	1.1	1	23	143	165	143	165	0.97
4	15	1.9e-05	0.0004	21.0	0.7	1	23	171	194	171	194	0.97
5	15	0.00014	0.003	18.3	1.2	1	23	199	221	199	221	0.97
6	15	0.00038	0.0082	16.9	2.2	1	23	233	255	233	255	0.98
7	15	0.00043	0.0094	16.7	0.9	1	23	261	283	261	283	0.96
8	15	0.0013	0.027	15.3	2.5	1	23	289	312	289	312	0.96
9	15	0.00017	0.0037	18.0	1.8	1	23	317	339	317	339	0.98
10	15	8.3e-05	0.0018	19.0	2.5	1	23	345	367	345	367	0.98
11	15	0.0075	0.16	12.9	1.1	1	23	378	400	378	400	0.98
12	15	0.035	0.77	10.7	2.5	1	23	406	428	406	428	0.94
13	15	4.5e-06	9.7e-05	23.0	0.4	1	23	434	456	434	456	0.99
14	15	3.3e-05	0.00071	20.3	0.6	1	23	462	484	462	484	0.98
15	15	4e-05	0.00087	20.0	1.8	1	23	490	512	490	512	0.98

Sequence Information

Coding Sequence: ATGGAACAAAATTTGAAAAATTTAATTAAAGAGGAAATTTTGGATGATAGCGATTTAGATGAAAGCACAGGACATATTAAATTGGAACAAATTTTAGTTAAGAATGATGATTCGAATGAACAACAAAATAGTGAGAAAATTTATAAATTTGAAGAACACTTAGTTAAAACTGAAATAATTGATGAAAATTATAAAATTAATCCAGAACACATTATAATTGAACCAGAATTACCAATAAATTGTGAAATTGAAAATCCATTTCCATGTAATGTTTGTGAAAAGTCTTTTATGTGGAAATCCAAATTAATTACTCATTTGCAAACACATTCAAGAGAAAAATCGTATCCATGTCATACTTGTGATGAAAAATTTACAAGACAAAAAAATTTAATTCAACATTTCCGTGTAAAACATAACCAAAAACCTTTTCCTTGTGATGTTTGTGAGAAAACATTTTCTTTAAAGAATTCTTTAGAAAAACATAAACTAAAACATACAAAAATAACGTGTTTTTCATGTGATGTTTGTGACGAAAAATTTACACGGAAAAAAATGTTAGTTTTACATTTACGCGTTCAACACGGACGAAAACCTTTTTCATGCGATTCTTGTGATAAAACATTTTCTTTAAAAAATTCTTTAGAAAAACATAAAATAGTTCATACAGAAGAAAGTGTCCAAAAGTTAGATGAATCATTTTCATGTGATCTTTGTGATAAAAAATATGTTGAAAAACGTGATTTAATTCATCATAAACGGGTTCATTCTGGAGAAAGACCTTATACTTGTGATTTATGTGATAAAACATTTACAATTAAAAGATATTTAATCGAACATAAAGAACTGCATAGTAACGAAAAATCATTTTCATGTGACCAATGTGATCTGAAATTTATCGTGAAAAAATACTTAAGAAAACATAAACGTGAATATCATGGAGAAAAACGTTTTTCATGTGATGTTTGTGACAAAAAATTTACGGTTAATCGGTTTTTAACTATGCATAAACGAATTCACACTGGAGACAAACCGTATTCCTGTGATTTATGCGATAAAAAATTCACATTACATAGTAATTTAATTGGTCACAGACAAACGCATACTGGAACACAAAGAGTTCGACCGAAAAAATTTACATGTGACATTTGTGAATCCTCTTTTATCTCGAATCATCGATTAATTGAACATAAAAACATTCATACGGGTAAAAAACCGTATTCATGTGATGTCTGTGATAAAAAATTTACATGGAAACATATTTTACGTCGTCATAAGCTTGTTCATACGGGTGAAAAACCTTTCACATGTGATATTTGTGGTAAAACATTTCGGGCAGCTGGTACTTTAGTTACACATAAACGAACTCATACGGGTGAGAAGCCGTATGTTTGCGAAATTTGCGCGAAGGCATTTACTCAACATACAAGTTTAGTTGTACATAGACGAGTTCATACGGGTGAAAAACCTTATTCCTGTAATGTTTGTGAGAAAACATTTACGTATCAAAATTCGTTAATGATGCATAAAAAAATTCATGATTCTTCTCATTCAAATTCTGAGTTTGATTTCGGTTCAGTTTCAGATCTTGAGTTAAATTATTAG
Protein Sequence: MEQNLKNLIKEEILDDSDLDESTGHIKLEQILVKNDDSNEQQNSEKIYKFEEHLVKTEIIDENYKINPEHIIIEPELPINCEIENPFPCNVCEKSFMWKSKLITHLQTHSREKSYPCHTCDEKFTRQKNLIQHFRVKHNQKPFPCDVCEKTFSLKNSLEKHKLKHTKITCFSCDVCDEKFTRKKMLVLHLRVQHGRKPFSCDSCDKTFSLKNSLEKHKIVHTEESVQKLDESFSCDLCDKKYVEKRDLIHHKRVHSGERPYTCDLCDKTFTIKRYLIEHKELHSNEKSFSCDQCDLKFIVKKYLRKHKREYHGEKRFSCDVCDKKFTVNRFLTMHKRIHTGDKPYSCDLCDKKFTLHSNLIGHRQTHTGTQRVRPKKFTCDICESSFISNHRLIEHKNIHTGKKPYSCDVCDKKFTWKHILRRHKLVHTGEKPFTCDICGKTFRAAGTLVTHKRTHTGEKPYVCEICAKAFTQHTSLVVHRRVHTGEKPYSCNVCEKTFTYQNSLMMHKKIHDSSHSNSEFDFGSVSDLELNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -